Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0274 ATGTCGAAAGTTCTAAGTACTAGGACAATAGGTCCTAAGCTAACTGAGAGTGGGATAACTGTGATAACACCCACTTACATGGCAGCAACTGAATCAGCAAAAGCCAAAGCAAGATCCATAAGCTCCCAAAGATTAAGGGAATGGAATAATAATTTGGAGACTGGTTCTGATTATAGCTATCCATCACCATGCAAGAAGAAGCTACCTCTTGTATCTTCTGTTAACACTACTGCTAGTGAGGTTTTTGCATCTGGAACGAAAATTAGAAAGATTTTCAAGCATTCTACAGACTTTCAACTGATGACCACAGGGGATACTACTGCAAGGGCATCTAGAAACCTGCAAATGCCTCCACAGTCACCTCCATCATCCAAAACCAACAAGCTTTATTTTTTCTATGGCCACCGCAAGCCCTCTCAAAATCGGCCAGTTGTCCGTGGTGGTCTTTTCTCCAATCGCCAAACACTTAACCCCAATAAAACAAAATATACTGAAGTCCAGCCCTTTGATATACACAAGTGGGACCCTTACTTCCTCTCCCAGTCACCATCATCTTCAGCACCAGCACCAGCACCAGAAACCTCATTCTCCATCTCTCTCCGTTTATCTCCGATTGCCCGATTCATTATTGATGCCTTCCGCAAGAACCAGAACAAGTGGGGCTCGTCTGTGGTGGAAGAGCTTCGAAAGCTCCGTAGGGTGACACCTAACCTGGTGGTTGAGGTGCTTAAAGTCCAAAATAATCCCACCCTTGCCTCTAAGTTTTTCCACTGGGCAGGGAAGCAGAAGGGTTACAATCACAATTATGCCTCCTACAATGCATTTGCTTATTGCTTAAATCGTAACAATCAGTTTCGGGCAGCTGATCAGCTTCCTGAACTGATGGATTCACAGGGGAAGCCACCTAGTGAGAAGCAGTTTGAGATCTTAATCAGAATGCATTCAGATGCCAATAGGGGTCTTAGGGTCTATTATATTTATGAGAAAATGAAGAAATTTGGGGTTAAACCTAGGGTCTTTTTGTATAATAGGATTATGGACGCATTAGTCAAAACAGATCACTTGGATTTGGCATTATCAGTTTATGATGATTTTAGAGAAGATGGTTTGGTTGAAGAGTCTATTACTTTTATGATTTTGATAAAAGGATTGTGTAAAGTGGGGAGGATCGTTGAGATGTTGGAGATTCTGAGTCAAATGAGGACCAACCTGTGTAAGCCAGATGTATTTGCATATACTGCTATGGTTCGTGTGCTGGTTTCAGAGGGCAATTTAGATGGGTGTTGGAGGGTTTGGGATGAAATGAAGAGGGATGGGGTTGAGCCTGATGTCATGGCTTATGCAACATTAATTACAGGTTTATCTAAAGGGGGCAGAACTGAAGAGGGTTATCAATTATTCAAGGAGATGAAGAAAAAGGGCCATTTGATTGATAGAGCAATATATGGAGCACTCATCGAGTCATTCGTGGCAAGGAGGGAGGTTGGCTCTGCTTGTGATTTGTTGAAGGATTTGATGGCTTCGGGATATAGGGCTGATTTGGGGATATATAATTCACTTATTGAAGGTTTGTGTAGCGTGAATCAAGTTGAGAAAGCTTACAAGATTTTCCAATTCACTATACAGGAAGATCTTAAACCAGACTTTGTATCTGTAAAACCCTTATTGATGTCTTATGCTGAAGCAGAACAAAAGGAATATTTTTACCAGTTGCTCAAGCAAATGAAGAACTTGGGCTTACCAGTTCTTGATGACCTGTCCAAATTCTTTGCCTTTTTCATAGAGAAGAAGGGACCGATACCAGCACTAGATACATTTTCGGATCTGAAAGCAAAAGGTTATATTAGTGTCAAAATATACAACACTCTTATGGATTCTCTGCAAAAGATTGGTCAGGCCAAGAAGGCATTATCACTCTTTGATGAAATGAATGGCTCAACATGTACACCTAATTCATCTACATACAGTATAGCAATTACATGTTTTGTTGATCTTGAGGAAATTCCAGAGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTCTGTTCCATCTGTTCCTGCTTACATTTGTCTTTCCAAAGGGCTTTGCAAAATTGGAGAGATCGATGCAGCCATGATGCTTGTTCGCGACTGCTTAGCCAATGTCGATAGTGGACCGATGGAGTTTAAGTATACTCTTACCATACTCCATGCATGCAAGTCAAATGATGCAGAGAATGTGATTGGAGTCTTAAATGAGATGATGCAAGAAGGTTATCCTCCTGATGAAGTCATATACTCTGCAATCATCTCTGGCATGTGTAAGCATGGAACAATTGAAGAGGCCAGGAAGGTTTTCGCAAACTTGAGGGAGCGGAAATTATTGACCGAAGCCAATGCAATTGTGTATGATGAAATACTAATTGATCACGTGAAGGAAAAGACAGCACAGTTGGTGCTGTCGGGATTGAAGTTCTTCGGTCTAGAATCCAAGTTAAAATCAAAAGGTGTTAAGTTCCTACCAAGTTGA 2514 0.4117 MSKVLSTRTIGPKLTESGITVITPTYMAATESAKAKARSISSQRLREWNNNLETGSDYSYPSPCKKKLPLVSSVNTTASEVFASGTKIRKIFKHSTDFQLMTTGDTTARASRNLQMPPQSPPSSKTNKLYFFYGHRKPSQNRPVVRGGLFSNRQTLNPNKTKYTEVQPFDIHKWDPYFLSQSPSSSAPAPAPETSFSISLRLSPIARFIIDAFRKNQNKWGSSVVEELRKLRRVTPNLVVEVLKVQNNPTLASKFFHWAGKQKGYNHNYASYNAFAYCLNRNNQFRAADQLPELMDSQGKPPSEKQFEILIRMHSDANRGLRVYYIYEKMKKFGVKPRVFLYNRIMDALVKTDHLDLALSVYDDFREDGLVEESITFMILIKGLCKVGRIVEMLEILSQMRTNLCKPDVFAYTAMVRVLVSEGNLDGCWRVWDEMKRDGVEPDVMAYATLITGLSKGGRTEEGYQLFKEMKKKGHLIDRAIYGALIESFVARREVGSACDLLKDLMASGYRADLGIYNSLIEGLCSVNQVEKAYKIFQFTIQEDLKPDFVSVKPLLMSYAEAEQKEYFYQLLKQMKNLGLPVLDDLSKFFAFFIEKKGPIPALDTFSDLKAKGYISVKIYNTLMDSLQKIGQAKKALSLFDEMNGSTCTPNSSTYSIAITCFVDLEEIPEACECHNKIIEMSSVPSVPAYICLSKGLCKIGEIDAAMMLVRDCLANVDSGPMEFKYTLTILHACKSNDAENVIGVLNEMMQEGYPPDEVIYSAIISGMCKHGTIEEARKVFANLRERKLLTEANAIVYDEILIDHVKEKTAQLVLSGLKFFGLESKLKSKGVKFLPS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Lele10g0274 837 Gene3D Tetratricopeptide repeat domain 720 789 IPR011990 GO:0005515
Lele10g0274 837 Gene3D Tetratricopeptide repeat domain 209 402 IPR011990 GO:0005515
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lele10g0274 837 Pfam Pentacotripeptide-repeat region of PRORP 461 577 IPR033443 -
Lele10g0274 837 Pfam Protein of unknown function (DUF4005) 21 71 IPR025064 -
Lele10g0274 837 Gene3D Tetratricopeptide repeat domain 595 719 IPR011990 GO:0005515
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Lele10g0274 837 Pfam PPR repeat 753 781 IPR002885 -
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 619 651 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 516 548 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 341 371 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 759 789 IPR002885 -
Lele10g0274 837 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Lele10g0274 837 Gene3D Tetratricopeptide repeat domain 495 591 IPR011990 GO:0005515
Lele10g0274 837 Gene3D Tetratricopeptide repeat domain 403 494 IPR011990 GO:0005515
Lele10g0274 837 PANTHER ATPASE EXPRESSION PROTEIN 3 177 580 - -
Lele10g0274 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 757 791 IPR002885 -
Lele10g0274 837 Pfam PPR repeat family 617 662 IPR002885 -
Lele10g0274 837 Pfam PPR repeat family 337 386 IPR002885 -
Lele10g0274 837 Pfam PPR repeat family 407 456 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0274 Lele-ChrLele10 1809756 1815063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0274 235 789 Glycosyltransferase AT1G05670 22.801 1.86e-37 148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0274 10 1809756 1815063 Lele11g0274 11 2901497 2903293 hybridization
Lele10g0274 10 1809756 1815063 Lele12g1001 12 17638031 17646549 hybridization