Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0227 ATGGGGACTGCTATCGCTAGCACGGCCCAGTCTCTTCGAAGCTCTCATTTCTTCAGATTCTCTTTCAATCTCTTCAGAACCTTGAGCTCTGCTTCGTCTTCGGCTACTTCTGCTACTCAAAATCCTATCGCCTCTAAGAAATCCAAGAGAAGAAAGAAGAAGAACTTATTCGAGGTCGCTCAGTTCTTGCCTAACTGGGGAATCGGATACCGCATGGCCAAGACTCACTGGAGTGACGTCTCTTATGAAATCACCAAAATCAATCTCTACAAGGATGGAAGGCATGGCAAGGCATGGGGAATAGTTCACAAAAATGGCTTGCCTGCAGCAGACGCTCCAAAGAAAATTAGTGGGGTTAACAAGCGCTGCTGGAGATACATTACACATGCAGAAAAATCACCAAACTCAACAGGTCTTGTTTTTACAATACAGCGTGCCCAAGAGAATCAGCGGATCAATGGCTGTTCTCAGATAGTAGTGGCAATTTTTGATTTGGGGATTGAAAGATTGAAGGCAGAAAATGTCAGATCTTATTCCTTTTCTTCGCGTTTCCAATTAATAGGTCCTCTGGAAAGGTTAGAGAAGTTGATGCATGAAGCCGGGAACAAATATTGTGCTGATTGCGGGTCCCCAGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTACTGCACTTGCAAAGTTGGGAGGGAATATATCAGTAAATAAAAAGTACGAAGCTTTCATCCCTAGTTATATAAAAAAGCCAAAGCCGACTTCCTCCATCGATGAGCGTGCTGATTTTATCAGGAGAAAATATGAGTTGCTACAATTTATGGGGTGTGATGAACAATTGTCCTGCCCCTTTATACCACAACAGAGCAGTTCCTCATTCATCATGCCTCCTCTAGACAAGAAAAATTATAATAAACCTGCAAACAAAAATCGTATCGGGAGCACATTTCGTAACAGCTGGGGAAGAAAAGAACCCGATAATAATAAAAACAATAAGTCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATTAAGGTTAATGTGGTCAAAGGCACTAACCTGGTAATCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGCCACCAATCAGTAAGGACGCGAGTTATAAAGAACAATTTAAATCCTGTCTGGAATGAGAGCCTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCTTACTCATGGCTGCAAAAACCTATGAGAAATGTAGAGCCAATGAACCCATGGAGTTTGAAAATTTGGTGGCCAGTTTGGACAACGCGCTCGTTAAAGATGGCATCATCTCTCTCGAAGACGGGAAGATCAAACAGGAAATATCTGTAAAGCTGCAGCATGTGGAGAGAGGTGAGCTGGATGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG 1608 0.4204 MGTAIASTAQSLRSSHFFRFSFNLFRTLSSASSSATSATQNPIASKKSKRRKKKNLFEVAQFLPNWGIGYRMAKTHWSDVSYEITKINLYKDGRHGKAWGIVHKNGLPAADAPKKISGVNKRCWRYITHAEKSPNSTGLVFTIQRAQENQRINGCSQIVVAIFDLGIERLKAENVRSYSFSSRFQLIGPLERLEKLMHEAGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVTALAKLGGNISVNKKYEAFIPSYIKKPKPTSSIDERADFIRRKYELLQFMGCDEQLSCPFIPQQSSSSFIMPPLDKKNYNKPANKNRIGSTFRNSWGRKEPDNNKNNKSSKKSNSLAGMVEFVGLIKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLMAAKTYEKCRANEPMEFENLVASLDNALVKDGIISLEDGKIKQEISVKLQHVERGELDVELECLPLTQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0227 535 MobiDBLite consensus disorder prediction 338 352 - -
Lele10g0227 535 CDD C2_ArfGAP 378 522 - -
Lele10g0227 535 FunFam stromal membrane-associated protein 1 isoform X1 188 310 - -
Lele10g0227 535 Pfam Mitochondrial 28S ribosomal protein S34 54 131 IPR032053 GO:0003735|GO:0005739
Lele10g0227 535 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 188 535 IPR044518 GO:0005096|GO:0005543
Lele10g0227 535 SMART C2_3c 380 475 IPR000008 -
Lele10g0227 535 Pfam Putative GTPase activating protein for Arf 192 304 IPR001164 GO:0005096
Lele10g0227 535 Gene3D C2 domain 378 535 IPR035892 -
Lele10g0227 535 ProSiteProfiles C2 domain profile. 362 477 IPR000008 -
Lele10g0227 535 Gene3D Arf GTPase activating protein 185 311 IPR038508 -
Lele10g0227 535 MobiDBLite consensus disorder prediction 335 368 - -
Lele10g0227 535 ProSiteProfiles ARF GTPase-activating proteins domain profile. 190 312 IPR001164 GO:0005096
Lele10g0227 535 SMART arf_gap_3 187 312 IPR001164 GO:0005096
Lele10g0227 535 CDD ArfGap 193 299 - -
Lele10g0227 535 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 376 472 IPR035892 -
Lele10g0227 535 Pfam C2 domain 380 468 IPR000008 -
Lele10g0227 535 PRINTS HIV Rev interacting protein signature 221 238 IPR001164 GO:0005096
Lele10g0227 535 PRINTS HIV Rev interacting protein signature 242 263 IPR001164 GO:0005096
Lele10g0227 535 PRINTS HIV Rev interacting protein signature 202 221 IPR001164 GO:0005096
Lele10g0227 535 SUPERFAMILY ArfGap/RecO-like zinc finger 192 305 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0227 Lele-ChrLele10 1522580 1530429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0227 192 535 C2H2 Transcription Factor Family AT4G21160 48.256 8.93e-116 344