Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0222 ATGGACGATCCCTTCTCCAACGACAAGCTTTGTGGCTTCCTATTTGCGGTTCTCTCTGTGACTCCTTCGCAACCGGACCCGTGTGCCAGTTTAGGCTTCAAAGAGCGCTGCGACATCTCTGGCGACGGTTCTAATGCCGTCGGATTTAGGTCCGATAACGGCGTTGTTTTAGTTCCGGTGGATTCGGCGGCCAAGCAGAATGAGGGCGGGAACGCATCTCCTTCTGATTCAAGGCAGCCCGAAGTGGTGGGGAGGGAATCTAGGATTGATTACGATTTCAATGGTTCTATTACTCCTCGGAGTTCGCGAAAGAAAGGCAATGTAAGAAGGAAAAATCACGTGGCGTCTGGGAGTGGTAGCTTGAGGAGAAAGAGGATGACGAGGATTGGGATGGTGAATGGAAGTGTTAGCGTGATTCACCAGCTTCATGCTTTGGTTAGCAAAAAGTGCTTGAAGATTGATGCTCGAGTGGTTTTGGTTGACCTTGGGGACTGTGGGGAGGCCAGAGCTGTATTACTGGTCGATGTGTATCTTCCAATTGCATTGTGGAGTGGCTGGCAATTTACTAAATCCGGGTCAACTACTGGTGCTCTTTTTCGGCATTTGAGGTGTGACTGGGATGAGAGAAGATCAATTCTTTCTTGCTCAAACTATATTAGGAAGATTCAGTGGGCTACTGAGAGCATTTGGAACCTTTGTGACTGTCATGTATTTGGATGCAAACTCCACTACTGTGTGAGAGATTCTTCAAAGAATAGACTATTTGAACTTCATGAAATTTTTAAGAGTATACCTGGTGTTGGAAAAGAGTGGAAGCCTGATAATTCCAGGATAGTACCCTTGAATGACTCTTTGAGATCTGGAATTTGGGTCTTATCTGACGACATTTTAACAAAAATTCTAGCTCCCCTAGGCCCAATGGACATTGCGAGGGTTTCTGCAACTTGTCATCATCTGAGATCCTTGTCTGCTTCAATAATGCCTTGTACAAAGTTAAAACTGTTTCCCCACCAGCAGACTGCTGTTGAGTGGATGTTGCGTCGGGAGCGAAATGCTGAACACTTGGCACATCCTTTGTATGTTTCTTTTTCAACAGAGGATGGGTTTGTTTTCCATATAAATACTGTATCTGGTGAAATAGTCATTGGGGAAGCTCCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAACCTGGTTTGGGTAAGACTGTAACAACTCTTTCTCTTATACTGAAGACACAGGGTACGTTGGCAGATCCCCCAGATGGAGCAAAGGTGGTATGGTGTCACCATAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAGTTACATAATTGACAGTAGTAATTTGGGGAAGAGGGACATATGCCAGGATGCTAGGAATAATGAGCACCCTGATCACTCCTCCAAAAGAGCTCGATTGAAGGTTCCTGCTGAGAAAACCTGTGGACTTAATAATAAATTTTCTGGGGAAGAAAAAAATTCACCTGTAGGTGAATACTCTGAGCAGCCAATTTCTGCAAGTCGATGCTCTTGGGGCTTGAGTTGCATAAAGAAAGATCTATGTGCCACTTTTGAAGAGGAAGCTGGGCATTCCAAACAAAGAAAAGATAGTGTAAGCTCTATGAAACTAAAACATGCATCAAATGCTGAAGCACATGTATCTGAAAATAAGCCAGATGATACTTCATATGGACATGAAAAGGGTTGCAAGGGACCTGAGAAGCCTACAGTGGATTCTTTTGAGTACAATGACACTTGGATTCAGTGTGATGCTTGCCAGAAATGGCGAAAACTTGCAGATGCCAGTATGGCTAACACTAACACAGCATGGTTTTGTAGTATGAACAATGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATAGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTGGTGCAGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTGCTTAAGGAGCACCACACAACGATAAATTCTGAGACAAAGAAAGCCCTCACTTGGTTGGCTAGACTTCCTACTGACAAGCTTTCCGAAATGGAAATAAACGGCATAAGGGGTCCTGTTTTAAGCACCTGCACGGTGTCTAGTGGATATCTTAATCCATACCACAAGATATTTCAAACATTTGGTCTCATTAAGAGAATAGAAAAAGGTGTAACCAAGTGGTACTACCCACGAAATCTAAATAATTATTTGGCTTTCGATGTAACTGCCCTCGGCATGGCTCTGCGTGAACCATTAGATTCATTTAGGCTATACTTGTCAAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACACAGTCAATTGCAGGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGTCTGGCATGGGATTATGATGTTGTCATTACTACATTTAGTCGACTGAGTGCAGAGTGGAGCCCACGCAAGAGAAGTGTTCTGATGCAAGTCCATTGGCTGAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATATCGTTGACAGCTTCAAATCGTTGGGTACTATCCGGAACACCAACACCTAACACGCCTAAAAGTCAACTATCTCATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCATGGGAAGCTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGATCTCGTTTGTTGCATCTACTTCGTAATTGCATGATTAGTGCGAGGAAGACAGACTTGCATAATATTCCCCCATGTATCAAGAAAGCTGTTTTTCTAGATTTTACTGAGGATCATGCCAGAAGTTATAATGAGTTGGTATTAACAGTTCGTCGTAATATATTAATGGCTGATTGGAATGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGAACTGCAACTATAAAAAACATCAGGCTCTCGTGCTGTGTTGCCGGACATATTAAAGTTACACACGCTGGTGAAGATATTCAGGAAACGATGGATATGTTAGTAGGAAGTGGTATGGATCCTGATTCAGCTGAGTATTCCTCTATAAGATATAATCTGCTTTGTGGTGGCCGGTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCCTTTATTACACCATGTCGACATCTGTTGTGCCTTGAATGTGTCGCTTTAGACAGTATGAAGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCTGATACACTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAGGATCTTATTGAGCTACAACCTTCATATAAACAGGATGATTGGGATCCTGATTGGCAATCGACATCTAGTAGCAAGGTATCTTATCTTGTCCAGAGATTGAAAGCTTTACAAGCATCCAATAAGGAGAAGGGCTACTATAATAGCAATGATCAGGTTCTTGCTGAGAGCAGTTGCCCTCTGCTGATGAGAGATGTGAAATCATCATTCCAGCAATGCCCTCTAAGCACTGAATCCAATAATATGCCTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATTAAATATACTGGGATGTATAGTCCAATGCCTCTAAGCAACAAGAAGAAGTCATTGGCCACATTTCAGCATGATCCCGATTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTTTAATGGAACCAATCTGGGATAGAAGCATGGAGGAACAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCCATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTCGAATTTTTACAGGATGCTGATAGAAGTAGAAACTCCCCTAGTGAAGCTGTTGTTCAATCTGATGATGGTAGAGAATTCCCAACTAAAGGTGTTATCCAATTTGAAGAAGGGGGACGAGGACGTTCTTTGCATGATTTTGCAGAAAATAGTTATCTACTGAAACTTAGATTTGTTAACAATCCTAATGCCGTACAAGGTGCCTGA 4197 0.4236 MDDPFSNDKLCGFLFAVLSVTPSQPDPCASLGFKERCDISGDGSNAVGFRSDNGVVLVPVDSAAKQNEGGNASPSDSRQPEVVGRESRIDYDFNGSITPRSSRKKGNVRRKNHVASGSGSLRRKRMTRIGMVNGSVSVIHQLHALVSKKCLKIDARVVLVDLGDCGEARAVLLVDVYLPIALWSGWQFTKSGSTTGALFRHLRCDWDERRSILSCSNYIRKIQWATESIWNLCDCHVFGCKLHYCVRDSSKNRLFELHEIFKSIPGVGKEWKPDNSRIVPLNDSLRSGIWVLSDDILTKILAPLGPMDIARVSATCHHLRSLSASIMPCTKLKLFPHQQTAVEWMLRRERNAEHLAHPLYVSFSTEDGFVFHINTVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGAKVVWCHHNGNLKCGYYDIVGSYIIDSSNLGKRDICQDARNNEHPDHSSKRARLKVPAEKTCGLNNKFSGEEKNSPVGEYSEQPISASRCSWGLSCIKKDLCATFEEEAGHSKQRKDSVSSMKLKHASNAEAHVSENKPDDTSYGHEKGCKGPEKPTVDSFEYNDTWIQCDACQKWRKLADASMANTNTAWFCSMNNDPLYQSCSIPEQPWHNSCEITYLPGFHVKGGAGGEKKNVSFFTGVLKEHHTTINSETKKALTWLARLPTDKLSEMEINGIRGPVLSTCTVSSGYLNPYHKIFQTFGLIKRIEKGVTKWYYPRNLNNYLAFDVTALGMALREPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLQVYVWNDTWKWKPSVHSLAWDYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWVLSGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEAGILKPFEAEMEEGRSRLLHLLRNCMISARKTDLHNIPPCIKKAVFLDFTEDHARSYNELVLTVRRNILMADWNDPSHIESLLNPKQWKFRTATIKNIRLSCCVAGHIKVTHAGEDIQETMDMLVGSGMDPDSAEYSSIRYNLLCGGRCVRCKEWCRLPFITPCRHLLCLECVALDSMKCTYPGCNKLYEMQNPDTLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQASNKEKGYYNSNDQVLAESSCPLLMRDVKSSFQQCPLSTESNNMPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMPLSNKKKSLATFQHDPDCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDADRSRNSPSEAVVQSDDGREFPTKGVIQFEEGGRGRSLHDFAENSYLLKLRFVNNPNAVQGA 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0222 1398 Pfam SNF2-related domain 337 993 IPR000330 GO:0005524|GO:0140658
Lele10g0222 1398 Gene3D - 584 637 - -
Lele10g0222 1398 SUPERFAMILY F-box domain 287 324 IPR036047 GO:0005515
Lele10g0222 1398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 740 907 IPR014001 -
Lele10g0222 1398 Gene3D - 756 952 IPR038718 -
Lele10g0222 1398 Gene3D - 1106 1358 IPR027417 -
Lele10g0222 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1336 IPR027417 -
Lele10g0222 1398 MobiDBLite consensus disorder prediction 64 120 - -
Lele10g0222 1398 SMART fbox_2 292 332 IPR001810 GO:0005515
Lele10g0222 1398 Pfam Helicase conserved C-terminal domain 1209 1310 IPR001650 -
Lele10g0222 1398 SMART ultradead3 330 921 IPR014001 -
Lele10g0222 1398 MobiDBLite consensus disorder prediction 554 580 - -
Lele10g0222 1398 ProSiteProfiles Zinc finger CW-type profile. 586 637 IPR011124 GO:0008270
Lele10g0222 1398 CDD SF2_C_SNF 1215 1320 - -
Lele10g0222 1398 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 118 1336 - -
Lele10g0222 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 415 IPR027417 -
Lele10g0222 1398 MobiDBLite consensus disorder prediction 66 80 - -
Lele10g0222 1398 Pfam CW-type Zinc Finger 591 634 IPR011124 GO:0008270
Lele10g0222 1398 ProSitePatterns Zinc finger RING-type signature. 1085 1094 IPR017907 -
Lele10g0222 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 947 IPR027417 -
Lele10g0222 1398 SMART helicmild6 1228 1310 IPR001650 -
Lele10g0222 1398 MobiDBLite consensus disorder prediction 538 580 - -
Lele10g0222 1398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1200 1355 IPR001650 -
Lele10g0222 1398 CDD DEXDc_SHPRH-like 762 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0222 Lele-ChrLele10 1488661 1494645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0222 333 429 RAD5 or RAD16-like Gene Family AT5G22750 30.909 8.30e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele10g0222 SNF2_N 5e-97 CL0023