Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0189 ATGCCAGATGGTTTGAGCCAAACAAAATTGGGTCATGCTAAGAATTCGGACCGTGAAGGTGTGTTTAAGCTTTACGAGGATCTGGAAGGAAAAGTGGGGGATGTTTTAAAAGATGAGACTGTGAAAGGCGATACCAATGAGCACGAGTTGTTGAGGGCATATGTGGGGTGGCAGAATCACAAAGCTATGAGTTTTCTGCAATTAGCAGTCACAATGAACTCATCGGAGCTTCAGGTGTGGGACAATGCCGCCTTCGACAGGGACGAAGTACCCATGAAAGCTTCGGGGTCATCGAGTCTTGATCCTGTGTTCGAGAACCCTTCTGAATCACTGGATTCTGATCGTAGCAAGGAAAATCTGAGCCCGATAATGGTGAATTCCTCTGTTTCTGTGAAGTCTTCGGTCAACATTAAGCCGCTACATTTGAACGGCGTTCTCGGAAACTCACAGAGAAAACCCTCGAAGGTTTTGGCCAAGAAGAAGGCGTGCAAGCAAGACGGTGAGAGAAAGATCGATGCTGAGATTGAAGAAATTGAGAACGAGATTAAACGCTTGTCGTCTAGATTGGAAGCGCTTCAACTTGAAAAGGCTGAACAAATCGCGAAAACGACGGTTGAAAAGCGAGGGAGAGTTGTGCCTATGAAATTCATGAAAGCCAAACAGAGTGTGAAGAAGATCGAAGAGACTCCCTTATCGTCGAGTGTGAAATCGAAGGTTAATCGGAGGGGTGTGAGTTTGGGGCCGTCGGAAATTTTTGCCGAGGCAAAATTCCGGCTGCCAGGGAAGGTGGAAATGACTCCAGGTCCTGCGACACAAAGTGTGAAGAAGATTGAAGAGCCTTCATTGTCGTCCAGTGTAAAATCGAAGCTTAGTAGGAGGGGCATGAGTTTGGGGCCGTCAGAGATCTTCGCCACAGAAAGATTCCGGCAGCCGGGAAAGCTGGAAACGACCCCTGGTACGGCGACACAAAGTCGCCGGAAATCGTGCTTATTACAACTTCAAGATATCGAGGAATCAAAATCAGTGATAAGCGAAAGAAGGAAAAGTATGACTGTTAGTCCGAAATCACGAAAATATGTGAGTAGAATTGAATCTCAAAAGCAAGCAGCGACTACCACAGCAGGATGCAAAAAGCTTGTGAAGAAAGATTCTTCATTGATTCAGCCTAGAAAACTGTTCAAAGATGGTGAAAAGGAAAAATCAGTATCCACCAACAAGCCACTGAAGCCTGGACGAGTAGTAGCAAGCAGGTACAACATGGTTTCAAGTAATCAATCATGTGGGACGGCCATTGAAGCAGCTAGGAAGAGGTCGTTGCCGGAGAACGAGAAGGAAGAAGGTGGGAAGAAGACACGAGGGAGTGGGTCAATTACAGAGGAAGGGAGGACGAAGAAGAGGTGGGAGATTCCACCTGAGATCGTGCTTTACAAGAGGAAGGAGGAAAGAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGTGGAAAAGTACACGAAATTGTTGATGACAGATTTGCTTCCAAAGATCAAAACAACTCGATGTGTTGAAGACAGCCCAAGAGGATCAGGACCTGCAAAAAGAGTGGCTGAATTGAAGGGAAAGAAGAAATCTTACTTTTGCCCAGATAATGAGGATGATGATGAAGAAGAAGAAGAAGATGGGGTTGCTAGATTTGCTGCATGTGAGGCTCTGAGTTTTGCAGAACAAGAAAGTGATAACAATAATGATGAAGCTGAGGATGGAACATATGTTGGCTTCAGCACCGTCGGCACCCTTCTTCTTCTTCCCCCACTCCTCGAGCGGCTATCAGCTCCCTGGTTCTCTCTCGCTTTCGTTCTCTCTACTTCAACCATGGCTACTTCTAGAACTGTTAAGGACGTCTCGCCTCACGAGTTCGTGAAGGCTTATTCTGCTCATCTCAAGCGATCTGGCAAGATGGAGCTTCCCGAGTGGACAGATATTGTGAAGACTGCAAGATTCAAGGAGCTGGCTCCATATGATCCTGATTGGTACTATGTCAGGGCTGCCTCCATGGCTAGGAAGATCTACTTGAGAGGGGGTCTTGGTGTTGGTTCTTTCCAGAGGATTTATGGTGGGAGCCAGAGGAATGGTAGCCGCCCTCCTCATTTCTGCAAGAGCAGTGGCGCTATTGCTCGTAACATTCTTCAACAGTTGCAGAACATGAACATCATTGAAATCGACACCAAGGGTGGCAGAAAAATCACTTCAAATGGTCAGAGGGATCTTGACCAAGTGGCTGGCAGGATTGTGGTGGCCCCTTGA 2280 0.4693 MPDGLSQTKLGHAKNSDREGVFKLYEDLEGKVGDVLKDETVKGDTNEHELLRAYVGWQNHKAMSFLQLAVTMNSSELQVWDNAAFDRDEVPMKASGSSSLDPVFENPSESLDSDRSKENLSPIMVNSSVSVKSSVNIKPLHLNGVLGNSQRKPSKVLAKKKACKQDGERKIDAEIEEIENEIKRLSSRLEALQLEKAEQIAKTTVEKRGRVVPMKFMKAKQSVKKIEETPLSSSVKSKVNRRGVSLGPSEIFAEAKFRLPGKVEMTPGPATQSVKKIEEPSLSSSVKSKLSRRGMSLGPSEIFATERFRQPGKLETTPGTATQSRRKSCLLQLQDIEESKSVISERRKSMTVSPKSRKYVSRIESQKQAATTTAGCKKLVKKDSSLIQPRKLFKDGEKEKSVSTNKPLKPGRVVASRYNMVSSNQSCGTAIEAARKRSLPENEKEEGGKKTRGSGSITEEGRTKKRWEIPPEIVLYKRKEEREEEEEEEEEEVEKYTKLLMTDLLPKIKTTRCVEDSPRGSGPAKRVAELKGKKKSYFCPDNEDDDEEEEEDGVARFAACEALSFAEQESDNNNDEAEDGTYVGFSTVGTLLLLPPLLERLSAPWFSLAFVLSTSTMATSRTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARNILQQLQNMNIIEIDTKGGRKITSNGQRDLDQVAGRIVVAP 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0189 759 Coils Coil 164 202 - -
Lele10g0189 759 PANTHER OS06G0683900 PROTEIN 271 572 - -
Lele10g0189 759 SMART Ribosomal_S19e_2 622 758 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele10g0189 759 MobiDBLite consensus disorder prediction 390 413 - -
Lele10g0189 759 MobiDBLite consensus disorder prediction 347 373 - -
Lele10g0189 759 MobiDBLite consensus disorder prediction 429 464 - -
Lele10g0189 759 MobiDBLite consensus disorder prediction 390 405 - -
Lele10g0189 759 Pfam Ribosomal protein S19e 622 756 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele10g0189 759 ProSitePatterns Ribosomal protein S19e signature. 706 725 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele10g0189 759 Gene3D - 605 758 IPR036388 -
Lele10g0189 759 MobiDBLite consensus disorder prediction 347 375 - -
Lele10g0189 759 Coils Coil 473 499 - -
Lele10g0189 759 MobiDBLite consensus disorder prediction 436 464 - -
Lele10g0189 759 MobiDBLite consensus disorder prediction 92 117 - -
Lele10g0189 759 FunFam 40S ribosomal protein S19 618 759 - -
Lele10g0189 759 SUPERFAMILY "Winged helix" DNA-binding domain 622 757 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0189 Lele-ChrLele10 1220860 1228976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0189 617 759 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 82.517 4.53e-87 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0189 10 1220860 1228976 Lele11g0188 11 2341345 2342843 hybridization
Lele10g0189 10 1220860 1228976 Lele12g1070 12 18133333 18134143 hybridization