Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0186 ATGTTCCCGGCCGATCCACCTGTCTCAGCTACGGGCACAGGCCTCGGCTACGGCATCGCCATTGCAGTCAGCATTCTCGTCCTCATCTCCACCATCATGCTCGCCTCTTATGCTTGCATCCGAATAAAGGCCAACAGCAGCGGCCTTAACCGCCGCATTAGCAATAGTAATAGTAGCAGCAGTAATTCCGACCAGCCGGTGGTGGTGGTTTTGGGCCTGGATAAGCCCACGATTGAAGCCTACCCGAAGATTGTTTTAGGGGAGAGCCGGAGATTGCCCAGGCCCAATGGGGGCCCATGCGCTATCTGCTTGGGAGAGTATGTGAAGAATGATACGGTGCGGTGCGTTCCAGAGTGCAACCACTGTTTCCACGTGGAATGCTTGGATGAGTGGCTTCGTCTGAGTGCCACGTGTCCCATGTGTCGGAACTCTCCAGCTCCGTCGCCGGGGCCGACGCCGGTTGCCACTCCTCTGTCAGAATTTGTTCCACTTGCTTCTCACGCAAGTTATCCAAAAGGCTTGTTATAG 528 0.5549 MFPADPPVSATGTGLGYGIAIAVSILVLISTIMLASYACIRIKANSSGLNRRISNSNSSSSNSDQPVVVVLGLDKPTIEAYPKIVLGESRRLPRPNGGPCAICLGEYVKNDTVRCVPECNHCFHVECLDEWLRLSATCPMCRNSPAPSPGPTPVATPLSEFVPLASHASYPKGLL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0186 175 PANTHER RING-H2 FINGER PROTEIN ATL67 11 168 IPR044289 GO:0016567|GO:0016740
Lele10g0186 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 147 IPR013083 -
Lele10g0186 175 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Lele10g0186 175 Pfam Ring finger domain 100 142 IPR001841 -
Lele10g0186 175 SMART ring_2 100 141 IPR001841 -
Lele10g0186 175 SUPERFAMILY RING/U-box 99 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0186 Lele-ChrLele10 1200937 1202610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0186 1 165 C3H Transcription Factor Family AT5G07040 62.424 1.05e-64 194