Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0179 ATGAGGAAAAAGCTGGATACTCGTTTCCCTGCTGCTCGGATTAAAAAGATAATGCAAGCAGATGAAGATGTTGGGAAGATAGCACTAGCAGTTCCTGTTTTAGTTTCTAAAGCGCTAGAGCTGTTTCTGCAAGACCTTTGTGATCGTACATATGAAATAACACTTCAGAGAGGTGCAAAGACAATGAGTGCATTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGATTTTCTGAAGGATGTCGTCAGCAGGGTTCCTGACTATGGCCATGGGCATGGGCATGGGCATGGACATAACCATACTGAGACTGGTGCTGATGATCGGGTCATTCCAAGAAGAAGGAAAGCAGCAAATGATGATCACCATGATAGTGATGACGACTCTAAGAGAAGCAAGATGCATGAGGTTAGCCATACTGGCAGTAGTGGTAGGGGAAGAGGCCGAGGTAGAGGGAGGGGCCGTGGTCGAGGGGCTCGAAATGTTGAACGGGAAAGAGAGACTCATCATCAAGAGCTTGAAACTGAACCTTGCACTTCTGCTCTGAATAGCAGCAAACATAATCCTGATACAAATGTGGCAATTGATAATGGTTCAGAGCCAAAGGAGTTACCGAAAGAGAATAATGCAATTCCTGATGATGGCACTCAATCTGTCCGTAACATTGATCTGAATGCCAATTTGAATGAAAGCGAAGACAAAAATGCTAGCACAGCGGTAACCGATGCCCCTTTGCCTGATCCTCCAAAACCTGAGACTAAGCATGAAGAAATCCCTGGCTGGTCTCTTTCTGATGTGGACAAGATGGTCATTGACTCTATGCAGCTTGCACACCTTAGTAGACCTATGGAAGAGGATGAGGAAGATTATGATGAAGAAGGGTGA 888 0.4448 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSALHLKHCVQSYNVFDFLKDVVSRVPDYGHGHGHGHGHNHTETGADDRVIPRRRKAANDDHHDSDDDSKRSKMHEVSHTGSSGRGRGRGRGRGRGRGARNVERERETHHQELETEPCTSALNSSKHNPDTNVAIDNGSEPKELPKENNAIPDDGTQSVRNIDLNANLNESEDKNASTAVTDAPLPDPPKPETKHEEIPGWSLSDVDKMVIDSMQLAHLSRPMEEDEEDYDEEG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0179 295 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Lele10g0179 295 MobiDBLite consensus disorder prediction 212 239 - -
Lele10g0179 295 MobiDBLite consensus disorder prediction 249 263 - -
Lele10g0179 295 MobiDBLite consensus disorder prediction 90 263 - -
Lele10g0179 295 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 137 - -
Lele10g0179 295 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Lele10g0179 295 SUPERFAMILY Histone-fold 4 99 IPR009072 GO:0046982
Lele10g0179 295 FunFam dr1-associated corepressor homolog 1 86 - -
Lele10g0179 295 MobiDBLite consensus disorder prediction 157 175 - -
Lele10g0179 295 MobiDBLite consensus disorder prediction 176 196 - -
Lele10g0179 295 MobiDBLite consensus disorder prediction 90 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0179 Lele-ChrLele10 1164174 1167515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0179 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.147 3.16e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele10g0179 CBFD_NFYB_HMF 2.8e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0179 10 1164174 1167515 Lele11g0174 11 2243099 2246535 hybridization
Lele10g0179 10 1164174 1167515 Lele12g1081 12 18194228 18197629 hybridization