Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0169 ATGGAAGGAGGGTTAAGCCAGAATTCTGTTCCTTCATCAAGCTCTGTTGACAAGTCCGCGATTTTGGATGTTAAACCTCTGCGTTGCTTGCTACCAATTTTCCCAATGTCATCTCAAGGTCCTTCCTCTGGTCAGTATCCTTCTGGGTTTGCTCCTTTTTTCCCCTTTGGTGGACCTCAAGAATCTCATGCATGGACTGATCTTAATCAGCATGCTCCTCCCTCTGGAGTGACACCAGATGTTCCTATGCCTACTCCACTCCGTTCATTCAGAGGCCCTTTAGACTCTGCATCAAAACTTGGAGCACCGCATGGGAGCAGGTCAAAATCATCCCAAAGAAAGACCAAGAGCCAAAAATCACTAATTGATTTAAGTTCTGTAGTTGGTATTAGCCCAGCCCAACAAGCTGATGGTAACCGGGAAGTGGTTAATCTTGTACTCATGGAGTTTGATGCGCTTCGAAGGAGAATTAGCCAACTTGGAGATGGTAGGGAATATGTTTCAGTATCAACCAAGCGTGGAGATTTAAGAGCTGGCAATCTATTGATGACCGCAGGCATTCGAACAAACATGAAGAAGAGAGTAGGTGTAGCTCCTGGGGTTGAGATCGGGGACATTTTCTTTTTCAGAATAGAATTATGTGTTGTGGGGCTACATGCTCAGTCCATGGGTGGGATTGACTACATGACCATCAAGGGTGGGTTGGAGGAAGAACCTCTGGCTTTAAGCATTGTTTCATCATATGAATATGATGATCATGCGGATGATGATGATGTTTTAATTTATAGTGGACAGAGTGGGAACTTTGGCAAGAAAGAAAAGGCTGTGTCTGATCAGAAGCTTCAAGGGGGTAATCTTGCTCTGGAAAGGAGTTCACGACGGCACAATGAAGTGCGAGTCATCCGGGGCATGAAAGATGCTGTTAATCCAAATGCAAAAATCTATGTGTATGATGGTCTGTACAAAATTCAAGATTCATGGATAGAAAAGGGGAAATTTGGCAGCGGTGTGTTCAAGTACAAGTTGGTGAGAGTGCCCGGGCAACTTAGTGCGTTTTCTGTCTGGAAATCAGTTGAGAAGTGGAAGACAGATTGTTCTTCAAGGACTGGACTTATTCTTTCAGATCTCTCTTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGACCATGAGAGATTGCCTGGTGGTTTCACTTATTTTCATTCCCTTAAATATCCTAAACCGTTCAGCTTAATGCAGTCTTCTAATGGCTGCAACTGTACAAAAGCATGTGTGCCTGGTGATCTGAATTGCTCTTGTATCCGGAGAAATGAAGGTGATTTTCCATATACTGGCAATGGCGTTCTAGTGAGTCGTAAGCCCTTAATTCATGAATGTGGCCCCACATGTCATTGTTTCCCTAACTGCAAAAATCGAGTATCCCAAATGGGTCTAAAGCACTCCTTTGAAGTATTCAAAACAAGGGATAGAGGATGGGGTCTTCGATCGTGGGATCCTATTCGTGCTGGTTCTTTTATTTGTGAATATGCTGGAGAAGTTATTGACGAAGGAAACTTAAATCAAAACGAGGAGTTAGCAATGAAAGATGAGTATGCTTTTAATACTAACCGTATTTATCCTTCATTTAAGTGGAATCATACGCCTCAGTTTTTGGAAGAAGTGATTTCAAATGACTCTAGTGAGGATTATGATATTCCATCTCCTCTAGTTATAAGTGCTAAAGAGTTTGGAAATGTGGCTAGATTCATGAATCATAGCTGCTCCCCAAATGTTTTCTGGCAGCCGGTTGTTTATGAAGAAAACAATCAATCCTTCCTTCATATTGCATTTTTCGCTCTCAGACACATTCCTCCAATGACAGAGTTTACTTACGATTACGGGATTTCCCATTCTGATCATGCTGAGGGTAGCAGAACACCCAGAGGTAGAAACAAATGCTTATGTGGATCAATGAAGTGCCGTGGTTCTTTTAGTTGA 1986 0.425 MEGGLSQNSVPSSSSVDKSAILDVKPLRCLLPIFPMSSQGPSSGQYPSGFAPFFPFGGPQESHAWTDLNQHAPPSGVTPDVPMPTPLRSFRGPLDSASKLGAPHGSRSKSSQRKTKSQKSLIDLSSVVGISPAQQADGNREVVNLVLMEFDALRRRISQLGDGREYVSVSTKRGDLRAGNLLMTAGIRTNMKKRVGVAPGVEIGDIFFFRIELCVVGLHAQSMGGIDYMTIKGGLEEEPLALSIVSSYEYDDHADDDDVLIYSGQSGNFGKKEKAVSDQKLQGGNLALERSSRRHNEVRVIRGMKDAVNPNAKIYVYDGLYKIQDSWIEKGKFGSGVFKYKLVRVPGQLSAFSVWKSVEKWKTDCSSRTGLILSDLSSGAESIPVSLVNEVDHERLPGGFTYFHSLKYPKPFSLMQSSNGCNCTKACVPGDLNCSCIRRNEGDFPYTGNGVLVSRKPLIHECGPTCHCFPNCKNRVSQMGLKHSFEVFKTRDRGWGLRSWDPIRAGSFICEYAGEVIDEGNLNQNEELAMKDEYAFNTNRIYPSFKWNHTPQFLEEVISNDSSEDYDIPSPLVISAKEFGNVARFMNHSCSPNVFWQPVVYEENNQSFLHIAFFALRHIPPMTEFTYDYGISHSDHAEGSRTPRGRNKCLCGSMKCRGSFS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0169 661 ProSiteProfiles YDG domain profile. 196 344 IPR003105 -
Lele10g0169 661 Gene3D - 180 364 IPR036987 -
Lele10g0169 661 SMART set_7 483 636 IPR001214 GO:0005515
Lele10g0169 661 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 107 654 - -
Lele10g0169 661 SUPERFAMILY PUA domain-like 178 366 IPR015947 -
Lele10g0169 661 MobiDBLite consensus disorder prediction 62 120 - -
Lele10g0169 661 Pfam Pre-SET motif 377 475 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele10g0169 661 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 661 IPR025794 GO:0016571
Lele10g0169 661 Pfam SET domain 494 630 IPR001214 GO:0005515
Lele10g0169 661 ProSiteProfiles Post-SET domain profile. 645 661 IPR003616 -
Lele10g0169 661 ProSiteProfiles SET domain profile. 483 630 IPR001214 GO:0005515
Lele10g0169 661 Pfam SAD/SRA domain 195 348 IPR003105 -
Lele10g0169 661 ProSiteProfiles Pre-SET domain profile. 419 480 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele10g0169 661 Gene3D SET domain 365 660 IPR046341 -
Lele10g0169 661 SMART G9a_1 191 348 IPR003105 -
Lele10g0169 661 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 179 363 - -
Lele10g0169 661 SMART preset_2 373 467 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele10g0169 661 SUPERFAMILY SET domain 382 658 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0169 Lele-ChrLele10 1111349 1113334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0169 1 660 Su(var)3-9 homologs AT1G73100 54.294 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele10g0169 SAD_SRA 1.2e-46 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0169 10 1111349 1113334 Lele11g0160 11 2153545 2158378 hybridization
Lele10g0169 10 1111349 1113334 Lele12g1092 12 18248267 18250252 hybridization