Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0150 ATGCTTGACATCGGTACTGTTATTTTGACTTTTAAGGCACTGCTGAAAATCATCAGGCTGAAAGCTGTTCTCATCATGGACTTTGATCTAAGGTTACCTTCTGGTGACCACGATAAGGATGAAGAAGGAAATACAATTGCTGACATATTGGAAGTTGAAGAAAAAGTGCATACTGAAGATCTAGAAGGCCAGAATATGGTTGGTGCTAGTGTTGACGTACATGGTCTAGATAGTGGAGATTTGAATTCATCTACAGTGGATATGGCAATATTTAAGGAAGATACAAATCTTGAGCCCCTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTAGGTCAATGGGATTCAATACTGCAATACAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAATTTGCTTGTTCCAGGTATGGAACAAAAAGAGAGCATGACAAATCATTCAATAGACCACGTGCCCGACAGAACAAGCAAGATGCTGAAAATTCAACTGGTCGAAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCTGATGGAAAATGGGTAATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCTCAAGCTGTCAGTGAGCAAACAAGAAAAATGTATGCTGCAATGGCTAGACAGTTTGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAAAGTCCATTTGATAAAGGCCGGAATTTGGGCTTGGAGTCAGGGGATGCCAAGCTTCTACTTGATTTTTTGGTGCAGATGCATAGTATGAATTCAAACTTCTTTTATGCAGTAGATATTGGTGAGGATCAACGTCTGAAAAATCTTCTATGGGTTGACGCTAAAAGTAGGCATGACTATATGAACTTTTGTGATGTAGTTTCTTTTGACACCTTCTATGTTAGAAACAAATATAAGTTGCCTCTTGCGCTTTTTGTTGGAGTAAATCAGCACTATCAATTTATAATGCTTGGGTGTGCCTTAATATCAGATGAAAGTGCTGCTACTTATTCTTGGATAATGCGGACGTGGCTGAAAGCAGTTGGTGGCCAAGCTCCAAAAGTGATCATCATTGACCATGACAAGACATTAAAGTCAGTTATTTTAGATGTCTTTCCTAATGCTCATCACTCCGTGTGCTTATGGCATGTATTAGGGAAGGTGTCTGAAAATCTGGCTCATGTAATTAAGAGACATGAGAATTTTATGGCAAAATTTGAAAAATGCATCTATAGGTCATGGACAAATGATGAGTTTGAGAAGAGGTGGTCAAAAATTGTTGATAGGTTCGAACTCCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGCAAGTTATGGGTGCCAACATTCATGAGAGATATTTTCTTAGGTGGTTTGTCCACTGTCCAGCGATCAGAAAGTGTGAATTCCTTCTTTGATAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAGCAGTACGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGGTGATTCTGAGACCTGGAATAAAGTGGCAACATTAAAAACTCCTTCACCATTGGAGAAGAGTGTTGCAGGGAGTTACACGCATGCAGTGTTCAAGAAGATTCAAGTTGAGGTTATTGGTGCAGTTGCTTGTCATCCTAAAGCTGAAAGACAGGATGATGCAGGCATTAATTACAAGGTTCATGATATGGAAAAGAATCAAGACTTCATTGTTGTGTGGAATGACATTAAATCCGAAGTTTCATGCATATGTCGGTTATTTGAATATAGAGGTTTTCTTTGTCGACATGCATTGATTGTTCTTCAATATTCTGGCCTTTCGGTAATCCCATCCCGATATATCTTGAAACGGTGGACAAGAGATGCAAAAGGTGGACAAACAATGGGAGAAGAATCTGAACATATGCTAGCTAGGGTACAACGACACAATGATTTATGTCAGCAAGCAATGAAGTTGAGTGAAGAGGGATCTCTATCTCAAGACAGTTATAGTATTGCATTCCACGCGTTACGTGAAGCATACAAAAGTTGTGTGAGCGCTAACAATTCTAGCAAGAGTTCTACTGAAGTTGTCATATTAGCGAGTCACAGTCAGCTCTCCAATGAAGAAGATGCCCAAAGTAGAAATATGGGAAAGACAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGCTGAACTCCGAGTCCGAAATCATGACTGTTGGGGCTCAAGATAACATGCAGCAAATGGACAAATTCAACGCAAGGGCAGTAACCCTTGATGGTTATTATGGCTCTCAACAGAGTGTTCACCAGGGAATGTTGAACTTGATGGGACCAACCCGTGATAATTATTATGGGAATCAACAGACAATCCAGGGGCTGGGACAATTAAGTTCCATACCGACAAGCCACGATGGTTACTATGGTGCTCATCAAAGCATGCCTGGTCTGGCACAGCTTGATTTTTTCCGGGCATCGACGAATTTCACTTATGGCATTCGGGATGATCCAAATGTAAGACCAACCCAATTGCATGAGGACCCATCAAGACCTGCATGA 2610 0.3992 MLDIGTVILTFKALLKIIRLKAVLIMDFDLRLPSGDHDKDEEGNTIADILEVEEKVHTEDLEGQNMVGASVDVHGLDSGDLNSSTVDMAIFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREHDKSFNRPRARQNKQDAENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKTVVGLKNEKSPFDKGRNLGLESGDAKLLLDFLVQMHSMNSNFFYAVDIGEDQRLKNLLWVDAKSRHDYMNFCDVVSFDTFYVRNKYKLPLALFVGVNQHYQFIMLGCALISDESAATYSWIMRTWLKAVGGQAPKVIIIDHDKTLKSVILDVFPNAHHSVCLWHVLGKVSENLAHVIKRHENFMAKFEKCIYRSWTNDEFEKRWSKIVDRFELREDECMQSLYEDRKLWVPTFMRDIFLGGLSTVQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKGDSETWNKVATLKTPSPLEKSVAGSYTHAVFKKIQVEVIGAVACHPKAERQDDAGINYKVHDMEKNQDFIVVWNDIKSEVSCICRLFEYRGFLCRHALIVLQYSGLSVIPSRYILKRWTRDAKGGQTMGEESEHMLARVQRHNDLCQQAMKLSEEGSLSQDSYSIAFHALREAYKSCVSANNSSKSSTEVVILASHSQLSNEEDAQSRNMGKTNKKKNPTKKKKLNSESEIMTVGAQDNMQQMDKFNARAVTLDGYYGSQQSVHQGMLNLMGPTRDNYYGNQQTIQGLGQLSSIPTSHDGYYGAHQSMPGLAQLDFFRASTNFTYGIRDDPNVRPTQLHEDPSRPA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0150 869 ProSiteProfiles Zinc finger SWIM-type profile. 581 628 IPR007527 GO:0008270
Lele10g0150 869 MobiDBLite consensus disorder prediction 720 750 - -
Lele10g0150 869 SMART 26again6 603 630 IPR006564 GO:0008270
Lele10g0150 869 Pfam MULE transposase domain 312 404 IPR018289 -
Lele10g0150 869 MobiDBLite consensus disorder prediction 154 188 - -
Lele10g0150 869 MobiDBLite consensus disorder prediction 849 869 - -
Lele10g0150 869 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 93 701 IPR031052 GO:0006355
Lele10g0150 869 Pfam FAR1 DNA-binding domain 113 215 IPR004330 -
Lele10g0150 869 Pfam SWIM zinc finger 599 626 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0150 Lele-ChrLele10 990989 994298 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele10g0150 FAR1 1.2e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0150 10 990989 994298 Lele11g0141 11 2004838 2006185 hybridization
Lele10g0150 10 990989 994298 Lele12g1107 12 18349273 18358052 hybridization