Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0113 ATGTCTTCCAGGTTTATAGCAATTTCGGCTGTTTTTACAGCTTTGAGCTTCGTGGGTGTACAATTTGGCTCGGAGTTGACATTCAGTAAACTGAAATCAGAAGGAATTATCGGCAAGAATTTAATTCACCTGGATAAGGAGAATGCCAATCATGCCATTGAGTCGTTTTTGGGGTCGTACACCACTATATGGTTACTCGCAAATTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCTGAGTTGTATCCTACTGAAATTCGGAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTACCAATGATAGTGCCTGCATCAATATATCAGGCAGGTCTATGGTCTTGTTGGTTGATAGTACTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGACTGAATGCATCTCCATCTGCCAGACCCTGGACATATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACACACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTCTCAGTATCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGTTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACACTGATAGTGCAAGGTCAAAGCTGTTTGACACATTAGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTTTTACTAGACATGGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATATTGGGTGGCTTCATGGCATAGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGAACACTACTAAGTGCTCTTATAAATCGCATAAGAGCCTATATCAGGTTAAGGACAGCTTTAGGTTCACTACATGCAGCTCTTCCTGATGCAACTACTGAGGAGCTACTATCATATGATGATGGATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAACGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTGAGATCTTGGTTAGATCAAGGATTGACAGAGATGTATACTTGTCCAACATGTCGGAAGCCACTCTTTATTGGCCGGTCTCAAGATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAACCACATGCACACCAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGTAGACATGCCATTGCTGCTGGATTATTTCCCAACCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCCGGTCCATCTACTGCAGTGAGATCAGTTGAATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCACAATGCCCTTGAAGATACTGCCTGGAGCCTTTGGCCTATGAATCCTTCTCAGGCTTCTGCAAGTGGTTCACGGATTCCTCCTCCTCATGGGAGGTTCCCTGGAGGCTCTGATAATAATCTACATATGAGGAATGCCTCACGTTTTGCAAATGATAATCTGGCTAATATACTGGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCCGTATCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1767 0.4216 MSSRFIAISAVFTALSFVGVQFGSELTFSKLKSEGIIGKNLIHLDKENANHAIESFLGSYTTIWLLANFVINAFILLNLCLKTIFFSELYPTEIRKLVECLINYVIYKGTFLPMIVPASIYQAGLWSCWLIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPLSIACETLQAILVHGFQLLDIWLHHSACNNTDSARSKLFDTLAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHIGWLHGIAFHLVDAVLFLNIRTLLSALINRIRAYIRLRTALGSLHAALPDATTEELLSYDDGCAICREPMAKAKTLNCKHLFHLACLRSWLDQGLTEMYTCPTCRKPLFIGRSQDEASFNMRETSSEEPHAHQIGSGLDQPNTGRHAIAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAVRSVELGRVQMMMRHLASVGENAHNALEDTAWSLWPMNPSQASASGSRIPPPHGRFPGGSDNNLHMRNASRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0113 588 CDD CUE_RIN3_plant 549 586 IPR035667 -
Lele10g0113 588 ProSiteProfiles CUE domain profile. 548 588 IPR003892 GO:0043130
Lele10g0113 588 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 588 - -
Lele10g0113 588 SUPERFAMILY RING/U-box 328 388 - -
Lele10g0113 588 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Lele10g0113 588 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Lele10g0113 588 Gene3D - 547 587 - -
Lele10g0113 588 Pfam CUE domain 552 588 IPR003892 GO:0043130
Lele10g0113 588 Pfam Zinc finger, C3HC4 type (RING finger) 340 381 IPR018957 GO:0046872
Lele10g0113 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 392 IPR013083 -
Lele10g0113 588 SMART ring_2 340 381 IPR001841 -
Lele10g0113 588 FunFam E3 ubiquitin protein ligase RIN2 547 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0113 Lele-ChrLele10 789984 795422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0113 51 423 C3H Transcription Factor Family AT3G16090 26.150 5.10e-27 112