Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0100 ATGTACATCAAGGAAATTTGCTTGGAAGGTTTCAAATCGTATGCTACCAGAACTGTTGTTCCAGGTTTCGATCCCTACTTCAATGCCATCACGGGGTTAAACGGTTCCGGCAAGTCGAACATACTTGATTCGATTTGCTTTGTACTTGGGATCACGAATTTGCAGCAGGTCCGGGCTTCTAACCTTCAGGAGCTCGTGTATAAGCAAGGACAGGCAGGGATTACTAAAGCTACGGTGTCGGTTGTGTTTGATAATGCGGATAGGAGTCGGAGCCCTCTTGGGTATGAAGACCATCCAGAGATTACAGTGACAAGACAGATTGTGGTTGGAGGAAGGAACAAATATCTGATCAACGGGAAACTTGCCCAGCCTAGTCAAGTTCAAAACCTTTTTCATTCGGTGCAGCTGAATGTTAATAATCCACATTTTCTCATAATGCAAGGGCGCATCACCAAGGTTTTAAATATGAAACCACTGGAGATATTGTCAATGCTTGAGGAAGCTGCAGGAACAAGAATGTATGAGACGAAGAAAGAGGCTGCTCTAAAAACACTTGAGAAAAAGCAGAGTAAGGTTGATGAGATCAATAAGCTTCTCGACCAGGAGATATTACCTGCTTTAGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAGTGGGCTAATGGCACTGCTGAGTTAGATAAGCTGAGAAGGTTTTGTGTTGCTTATGAGTATGTTCAAGCAGAGAGGATTAGAGACAATGCGATGTGTGAGGTGGAACAAGTGAAGGCCAAGATAGCTGTGATTGATGACTCTACTAAGACCACAAAGGTGGAAGTACAGGCAATGGAGACCAAAATCGCAAGGTTGACAGCAGAAAAGGAAGAACGCATGGGCGGGGAAGTGAAATCATTGTCAGACAAAGTAGATGAACTTTCACAGAATCTTGTGAGGGAAACATCTATACTAAATAATAAAGAGGACACTCTGAGAATTGAAAAATCCAATGAAGAAAGTATTGTTAATAATATTGAAGACTTGAAACAATCTGTTGAAGAGAAGGCCTTAGCTGTAAAAAAGGCTGAAGAGGGAGCTGCAGATCTGAAAAGGAGAGTTGATGGGCTTTCCAAGAGTTTGGAGGATCATGAAAAGGAATACCAGGGTGTACTAGCTGGGAAGAGTAGTGGAAATGAGGAGAAATGCTTAGAGGATCAGCTAGCTGATGCAAAAATAGCAGTTGGGAATGCTGAAACAGAATTAAAACAACTAAAAACTAAAATTAGCCACTGTGAAACAGAAAGGAAAGAGAAAGCACATCAATTAAGGTCAAAACAGGAAGAAGCTACTGCAGTAGAAAATGAGCTAAATGCTAGAAAGAAAGATGTTGAGACTGTGAAGATGCAATTGGAGTCTCTTAGTTATAGAGATGGTGAGATGGAATCTTTGCAAAAGGAGCGCGCATCTGAGATGGAGTCAGTGCAAAAGTGGAAGGATGAAATACGCAAGCTTTCAGCACAATTAGCAAATGTTGAGTTTATATACCGTGACCCAGTCAAGAACTTTGATAGATCAAAGGTGAAAGGTGTGGTTGCGAGACTCATCAAAGTAAAGGACAGCGCTGCGATGACTGCCTTGGAGGTTACTGCTGGTGGAAAGTTGTTCAATGTTGTAGTTGACACAGAAAATACTGGCAAACAACTACTGCAGAATGGTGATTTAAGAAAAAGAGTGACAATTATACCTTTAAATAAAATTCAATCCCATACTGTTCCGTCTAGACTTCAACAAGCTGCTTCTAGATTGGTTGGTGAGGACAATGCTGAGCTGGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCTATGGAATATGTGTTTGGTTCTACGTTTGTTTGCAAAAACACTAATGCTGCTAAGGAGGTGGCATTTAATCGGGAGATTCGAACCCCCAGTGTCACTCTTGAAGGAGACATATTTCAGCCAAGTGGTCTTTTGACTGGTGGAAGCCGAAAGGGTGGCGGTCAGCTTTTAAGGCAACTTCATGATTTAGCAGAGGCTGAGTCAAAACTTTCAATACACCAAAGAAGGTTGTCTGAGGTTGAGGCAAAGATCACAAAGCTTCTTCCTCTTGAGAAGAAATGGAAAGACCTCAAAACACAGTTGGAACTTAAGTCATATGATCTTTCATTGTTTCAAAGCAGAGCTGAGCAGAATGAGCATCATAAGCTTGGGGAACTAGTGAAGAAGATTGAGCAAGAACTTGCAGAAGCAAAATCTGCCGTCAAGGAAAAGCAAATTATATGTGAAAACTGTGTCAAGACTGTATCATCGCTTGAGAAATCAATTAAAGAACATGACAATAATCGTGAAAGTAGGCTAAAAGACCTGGAGAAGAAGATAAAGTCATTCAAATCCCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAATGATAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATTCAGGAGCGCATGTCCTTGGAGAATCAATTAGCTTCTTTAAGGACACAGATCCATAATTTTGAATCAGAAGTAGAAGAACAGAAAATTAAGGTTGCTGCTGCAAGGACCGATCATGATCGAGTTCATTCAGAGCTAAATTCAATTCGTCTAAAAATGAAGGAGTGTGACAAGGAAATAAGTGTTATCATGAAGGAACATAAAATACTTGAACATAAACTCAGGGAAAATAATCTTGAAAGGAAGAGAATGGAGAACGAGGTAAAACGGATGGAGATGGAACAAAAAGACTGTTCGGTCAGGGTGGAGAAATTGATAGAGAAGCATGCATGGATTGCCTCTGAAAAACAGCTGTTTGGCAAAAGTGGGACTGATTATGATTTTTCTTCTCGTGATCCCTGTAAAGCAAGGGAAGAACTTGAGAAGCTTCAAGCTGAGCAGTCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTCATGGCGATGTTTGAGAAGGCAGAAGATGAGTATAATGATTTGATGTCCAAGAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAAAAGGAAACACTAAATGTTACCTGGGTTAAAGTTAACAAGGACTTTGGATCCATCTTTTCTACTTTGCTTCCGGGGACAAAGGCAAAGTTAGAACCTCCTGAAGGTTGCAGTTTTCTTGATGGTCTTGAAGTTCGTGTTGCATTTGGGAGCGTGTGGAAACAGTCCCTGTCAGAACTAAGTGGTGGTCAACGATCACTACTTGCACTTTCTCTGATTCTTGCACTGCTTCTATTCAAACCTGCGCCAATTTACATCCTTGACGAGGTTGATGCGGCACTTGATTTAAGCCACACACAAAACATAGGGAGAATGATAAAGGCACACTTTCCTCACTCCCAGTTTATCGTGGTTTCACTGAAGGAAGGCATGTTTAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTCTCAACGGTTCAGCGAACTGCAACAGCTAAGCAGAGCAAATGGCCACGTGTAGCAAATTGA 3549 0.4097 MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNADRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPLEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGTAELDKLRRFCVAYEYVQAERIRDNAMCEVEQVKAKIAVIDDSTKTTKVEVQAMETKIARLTAEKEERMGGEVKSLSDKVDELSQNLVRETSILNNKEDTLRIEKSNEESIVNNIEDLKQSVEEKALAVKKAEEGAADLKRRVDGLSKSLEDHEKEYQGVLAGKSSGNEEKCLEDQLADAKIAVGNAETELKQLKTKISHCETERKEKAHQLRSKQEEATAVENELNARKKDVETVKMQLESLSYRDGEMESLQKERASEMESVQKWKDEIRKLSAQLANVEFIYRDPVKNFDRSKVKGVVARLIKVKDSAAMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRKRVTIIPLNKIQSHTVPSRLQQAASRLVGEDNAELALSLVGYEEELKSAMEYVFGSTFVCKNTNAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGQLLRQLHDLAEAESKLSIHQRRLSEVEAKITKLLPLEKKWKDLKTQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELAEAKSAVKEKQIICENCVKTVSSLEKSIKEHDNNRESRLKDLEKKIKSFKSQMQSSLKDLKGHDNDKERLVMEMEAVIQERMSLENQLASLRTQIHNFESEVEEQKIKVAAARTDHDRVHSELNSIRLKMKECDKEISVIMKEHKILEHKLRENNLERKRMENEVKRMEMEQKDCSVRVEKLIEKHAWIASEKQLFGKSGTDYDFSSRDPCKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNKDFGSIFSTLLPGTKAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTATAKQSKWPRVAN 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0100 1182 Coils Coil 982 1026 - -
Lele10g0100 1182 Coils Coil 239 259 - -
Lele10g0100 1182 Coils Coil 894 928 - -
Lele10g0100 1182 Gene3D - 995 1176 IPR027417 -
Lele10g0100 1182 Coils Coil 817 865 - -
Lele10g0100 1182 Coils Coil 178 198 - -
Lele10g0100 1182 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Lele10g0100 1182 Coils Coil 473 507 - -
Lele10g0100 1182 Gene3D - 591 666 - -
Lele10g0100 1182 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1174 - -
Lele10g0100 1182 Coils Coil 736 763 - -
Lele10g0100 1182 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele10g0100 1182 FunFam Structural maintenance of chromosomes 2 1 202 - -
Lele10g0100 1182 FunFam Structural maintenance of chromosomes 2 518 584 - -
Lele10g0100 1182 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele10g0100 1182 Coils Coil 338 379 - -
Lele10g0100 1182 Gene3D - 1 203 IPR027417 -
Lele10g0100 1182 Gene3D - 812 902 - -
Lele10g0100 1182 CDD ABC_SMC2_euk 1 172 IPR027120 GO:0005524|GO:0016887
Lele10g0100 1182 PIRSF SMC 1 1167 IPR024704 GO:0005524|GO:0016887
Lele10g0100 1182 Coils Coil 679 699 - -
Lele10g0100 1182 Coils Coil 393 455 - -
Lele10g0100 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1158 IPR027417 -
Lele10g0100 1182 Gene3D - 426 590 - -
Lele10g0100 1182 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Lele10g0100 1182 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele10g0100 1182 SUPERFAMILY Tropomyosin 302 501 - -
Lele10g0100 1182 Coils Coil 789 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0100 Lele-ChrLele10 708979 718279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0100 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 9.83e-08 54.7