Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0094 ATGCAGAGGAGAAAGAAGAGAAACAATGGTAGCCAGATCTGTATGATTTGCGAAAGGTGCTTTGCTAACGGAAAAGCTAGGGGAGGGCATATGAGGTCTCACTTTGCCAAACTTCCCGTCCCTCCTAAGCCTGTTCCAATACCTCCAATTGCAGATCACGGGCCTTTAGAAAGATCCAAAGTTGATGTTCATGGTGGTTCATCCTCAACCCATCAGCGTTCGATCTCCTTTTCTTCACTAAGAAGTCATCTGAGGATGAAATCGCCTACCGAACAGAACTTTCACTATGTGAATCAAGACTTTGTAGCAAGAGTTTCGAACCACAGCGGTGACCAAGGAAGGAAATCAGATCAATCTTACATGTCTGGAAAGAGGTCTAAACGTTGCCGTAAAATCGGTGATGTAACAAGAGCATTAACTTTGCCGTCCAAGACAAAACTTGATGAAGACAATCCAAACCAAACAAGTTCCATCTTTGATTCTTACTTTCTAGCTAGAGATGCTGCTTTGACTCTCGTATTGCTTTCCAAGGCGAAATGTCCAGAAGGAAAAGAATTGGTCAAGAAGAAACAAAAAGTGAAGGATGCGAATGAACAAGAAGATTCATATGTGGAGTTTCACTCTCATGGCGGAATGTTCGTGTGCGAGATGTGCAAGAAAGTTTTCGGATCTTACCAAGCACTTGGTGGGCACAAATCAAGCCACAAAAAATTCATCAAGAATGACCAATTTGAGGTAGATGGTGAATTTGATGAAGAAAATGGGGATGATGGTTACTGGGGAAACAATAATGATGTTCTTGAAGATCCAAAAGTGTTGAAGTTCCCCCGCTGCTCCAAAGTGTTTGGTTTCAGCCAAGGACTTGGAAGACACGAGAACATACACTCTCCCAATGCTATGGAATTTGTGGCTAATGACATAGATCTTAACTCACCTGCTCCAATTGAAGATTATTGA 957 0.4222 MQRRKKRNNGSQICMICERCFANGKARGGHMRSHFAKLPVPPKPVPIPPIADHGPLERSKVDVHGGSSSTHQRSISFSSLRSHLRMKSPTEQNFHYVNQDFVARVSNHSGDQGRKSDQSYMSGKRSKRCRKIGDVTRALTLPSKTKLDEDNPNQTSSIFDSYFLARDAALTLVLLSKAKCPEGKELVKKKQKVKDANEQEDSYVEFHSHGGMFVCEMCKKVFGSYQALGGHKSSHKKFIKNDQFEVDGEFDEENGDDGYWGNNNDVLEDPKVLKFPRCSKVFGFSQGLGRHENIHSPNAMEFVANDIDLNSPAPIEDY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0094 318 MobiDBLite consensus disorder prediction 106 128 - -
Lele10g0094 318 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 12 317 IPR044303 GO:0006355
Lele10g0094 318 Pfam C2H2-type zinc finger 213 237 - -
Lele10g0094 318 SUPERFAMILY beta-beta-alpha zinc fingers 212 295 IPR036236 -
Lele10g0094 318 MobiDBLite consensus disorder prediction 49 75 - -
Lele10g0094 318 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Lele10g0094 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 235 IPR013087 -
Lele10g0094 318 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lele10g0094 318 SMART c2h2final6 12 34 IPR013087 -
Lele10g0094 318 SMART c2h2final6 213 235 IPR013087 -
Lele10g0094 318 Gene3D Classic Zinc Finger 185 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0094 Lele-ChrLele10 650121 651077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0094 14 317 C2H2 Transcription Factor Family AT1G02030 29.260 1.69e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele10g0094 zf-C2H2_6 3.5e-10 CL0361