Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0088 ATGGAAATAGTGGAACGTGAATGTGATAGTGTTTTTGTGGGTGAGCGTGGGGAAGACGGTTTTGTTTTGGTGGGGGCGCGAAGTGTGGGAAACGGTGCCAATGTGCTGTCGCTTACCAAGGGAAACTGTAATGTTTGGGCTCCACAAACGACACATGGTTGCCTTGTCGTTTGCCATCTTCTTGAAGCGCGGTATTTCCCCCCTTGGGTAGTGGTGAAGGAGGAAGAAGCGGTGGCAGGGTTGATGGAAATGATGCATTGTGGAACTGCACTGGGGGAAGAGAACATGATGTTAGAGAAGGTGGGAGAAGGGACCTATGGGAAGGTATACAAGGCGGAGGATAAAGCCACCGGGCGGCTAGTGGCTCTGAAGAAGATGCATCTGGAGATCGGCAGCCAAGGAATCCCTGGAACTACACTTCGAGAAATCTCCCTCCTTAAGATGCTCCGCATGTCCATCTACATCGTCCACTTGCTCTCTGTCGAGTACATCGACAAAACTTCAACTTCAACGCCTTTCCTCTTCCTGGTCTTTGAGTACCTTGACACTGATCTTAAGAAGTACATGGATTCTCTCCGGCGAGATCCCGTCCATCGTTCTCTTTCTCCTTGCAGTATTCAGAGCTTCCTTTACCAGCTCTGCAGCGGTGTTGTTCACTGTCACAACCATGGTGTTCTGCATCGTGATCTCAAACCCCAGAATCTTCTTCTTAACGAGCTGAGAGGGATTCTCAAGATTGCTGACTTTGGTCTCGGACGAGCCTTCCATTACCCTGGTGAGAGCTACACAACTAACGTGGTCACACTTCCTTACAGAGCTCCTGAGATTCTGCTGGGATCTACTCAATACTGCACTGCGGTTGACATGTGGTCCGTGGGATGCATTTTTGCTGAAATGGTGAGAATGCAAGATCTGTTTCCTGGGGACTATGAGTTTGAACAGCTCTTTCATATCTTCTGGTTGTTGGGAACTCCAGATGAGCAAGTATGGCCAGGAGTTACCTCTCTTAGGAATTGGCATGACTACCCACAGTGGAAACCACAGAATTTGGCTTTGGCTGTACCATCCTTGGGACCAGATGGAGTTAATCTTCTCTCTAAAATGCTGAAGTATGACCCAGCTGAGAGAATCTCTGCCAAAGAAGCACTAGATCATCCCTACTTTGACAGCCTCGACAAGTCTCAATTTTAG 1191 0.4861 MEIVERECDSVFVGERGEDGFVLVGARSVGNGANVLSLTKGNCNVWAPQTTHGCLVVCHLLEARYFPPWVVVKEEEAVAGLMEMMHCGTALGEENMMLEKVGEGTYGKVYKAEDKATGRLVALKKMHLEIGSQGIPGTTLREISLLKMLRMSIYIVHLLSVEYIDKTSTSTPFLFLVFEYLDTDLKKYMDSLRRDPVHRSLSPCSIQSFLYQLCSGVVHCHNHGVLHRDLKPQNLLLNELRGILKIADFGLGRAFHYPGESYTTNVVTLPYRAPEILLGSTQYCTAVDMWSVGCIFAEMVRMQDLFPGDYEFEQLFHIFWLLGTPDEQVWPGVTSLRNWHDYPQWKPQNLALAVPSLGPDGVNLLSKMLKYDPAERISAKEALDHPYFDSLDKSQF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0088 396 SMART serkin_6 95 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0088 396 Gene3D Transferase(Phosphotransferase) domain 1 184 395 - -
Lele10g0088 396 SUPERFAMILY Protein kinase-like (PK-like) 96 391 IPR011009 -
Lele10g0088 396 Pfam Protein kinase domain 98 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0088 396 PANTHER CELL DIVISION PROTEIN KINASE 97 388 - -
Lele10g0088 396 FunFam Cyclin-dependent kinase 4 93 182 - -
Lele10g0088 396 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Lele10g0088 396 ProSiteProfiles Protein kinase domain profile. 95 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele10g0088 396 Gene3D Phosphorylase Kinase; domain 1 95 182 - -
Lele10g0088 396 FunFam Cyclin-dependent kinase 2 184 395 - -
Lele10g0088 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0088 Lele-ChrLele10 625573 629768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0088 93 396 Core Cell Cycle Gene Families AT3G54180 68.831 6.63e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lele10g0088 Pkinase 7e-62 CL0016