Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0029 ATGACTCCGGCGAATTTGGCAGGCCAGTTTGGTGACACAACATACACAAAGGTGTTCGTAGGAGGGTTGGCTTGGGAGACTCAGAAGGAAACTATGAAGAAATATTTCGAGCAGTTTGGTGAGATCTTGGAGGCTGTCGTCATCACTGACAAAGCTACTGGCAAATCTAAAGGCTATGGATTTGTAACTTTTCGGGAACCAGAAGCGGCCATGAGAGCTTGTGTGGATGCTGCTCCAGTGATAGATGGTAGGAGGGCTAATTGCAACCTTGCTTCTTTGGGCGTCCAGAGATCCAAGCCTTCTACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGGTTTGGAGGAGTAGGATCAACTTTTCCTTCTGCTGCTCCACCAACACTTCCTCATTATGCTCTCCAGCAAGGAACGCCTTATAACGTTTATGGGTACTCTCCATACTCACCAGATTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACCCAGTACCCACTGTATGGAACCGGACCAGGAGGCATGATGACGAGTGCTGCGGCAGCAGCCACCGCCATCTACCCATATATGCAGTTCGGAGAAGGGAGCGGCAGCGGCGTAACCGGGGGCTACACTTCCGGTCAGGGCTATGGTTTGTACTACCCGCCACAGCTGTTTCAGTACTCTCCCATTTCTTCATCTGCTGGCTACGCACAGCACTATGCTCCCCCCATGTCTCTTGCACCTTCGCCAGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCTCCAATTCCTCATCGTTAG 825 0.5127 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGVGSTFPSAAPPTLPHYALQQGTPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTSAAAAATAIYPYMQFGEGSGSGVTGGYTSGQGYGLYYPPQLFQYSPISSSAGYAQHYAPPMSLAPSPALQSGVKMALQAPPIPHR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0029 274 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele10g0029 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele10g0029 274 PANTHER BOULE-RELATED 4 254 IPR037366 -
Lele10g0029 274 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Lele10g0029 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Lele10g0029 274 Gene3D - 4 113 IPR012677 -
Lele10g0029 274 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Lele10g0029 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0029 Lele-ChrLele10 187415 191589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0029 1 190 C2H2 Transcription Factor Family AT2G19380 29.851 4.73e-14 70.1