Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0024 ATGGTGGTGAATGAAAGGCCATCGAAGAGGATGAAGAGGAGAGTCTCCGCCGATCTTTATGATTTTCTCACTTTTCCGGCCGCCGGTGACCGCTGCTGCGACGATGTGGTCGGTGGCGGTAAACCGTTCCGGAAAACCGTTCAGCGGTTTCTTACTAATTATGCGATGGTCACATATCCCCCGTCGTTATTTTCCTCGTTGATGACGTGGCAGATGTTGTTCCGGATCGGAGGACTAGTCGATGGGTCCGATCTTTCGCCTGCGATTGTCACTCTCGACATTGTTGAGGAGAACGTAACTCGATCTCGAGCCTCAGTCTACTGTGATCAATGCCGAGTTGTTGGATGGAGTGGCCATCCAGTATGCCGAAAGCGATATCATTTCATTATCCGAGCTTCAAGTAATCACATGGATGCATATGAAAGACCTTGTTCATTATGTGGGAAATCTACCCAATTATCGGAAGCAAGGTGTAAATGGTGTGACGCTGTGATTACTGTTGAAGATCTAGAGGATTGGGTGTATAGTCAAATTGAAGACAACACTCATGTTCTGCACGGGATTGTCCACTCCAATGGTTATGGCCATTTGCTTACTCTTAATGGGAGAGAGGGTGGTTCAAAGCTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGTGTTGCACTTGCTGTTAGGAAGGTTAGTGTGATGGATTTGTCAAAGAAATTTGGGATGGAATACCGATTGCTTCATGCAATCACCTATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACTCAAGATTCGTACCAAAAAGCAGTGAATACCCTGTCAAGCATGCCCCTATCGGATTTATTATTCCAGGATCGTGGGCCCCGAAGTCGCCTGCAGTGTGTTATTGCTCTTTATCAATCTTTGGCAGATGCTGATCTGTTGACTATCAAAGATCTATTCTTCTTTTTGGTGACCTTAATTCGTGAGTTCCACAAGCCTCTGACCTCAGGAACATCGAACGCGGAAAGTTGCAATGTGTTATGTGCTTGGACAAGCAATGATGTTGAAGCTGTGCAACAGGCTTTGATCAAAGTACTGCTTGCATCGGCAGCCTCTAGTGGGGCGAAATGGGTGACAAGACGAGCTCTCAAGGGTGCATTAAGTAGGGGTGTTGCATCTTCAGAGCTTCTAGATTACAGTCTGAAACATCTGGGTGGAAAATCAGCTGCCTATGGTATGGTAGTTAGGTCAAGATGCAATCCCACATCTAGTGCTGTTGAGTTCAGGCTTGAAACCTTGAATGTTACGGAAAAAGAAGTTAGTGCAAATTCAGGATATCCATCAAAAGAGCAAGTGATTGCGGATTTGAAATTCTTGTTTGATTCGATCATTCATCCTGAAAGTATGGTGAGTTACAGACCTAAGGTTATGAGGAAGCGGGTGGCTGATTCGGCGAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTAATGATAAGATGACAGGTGAACAAGTGCCTCCATGTATTAGGCTGTGGTGTCACGTGGAGCTTTCGGATCAGCCAAAAGATGATCCAAATCCTCCTCCAGAACTGATTTTGCTGCCGTTGAATGCTACTGTAGCTGACCTAAAGAATGAGGCAACTGATACTTTTCAAGAAGTGTATGCCATGTATAAGAGGTTTCAAGCAGAGGAACTTTTGGAATATGGGTCTATCAAGGACATTCTCACTGTGAAGTTACTACTTGGAACAAGTGGGTCTGTCCGAATTTTAGGTAAATGCCCGGCAAAGCATGGCCTAAACCGCTTCCGAATGGAAAGAGGAATGGAGACATGGAAAGTTGATTGCCCTTGTGGGGCTAAGGACGATGATGGGGAGAAAATGTTAGCATGTGATACTTGCGGTATCTGGCAACATACCAGGTGTGCTGGAATTGATAATTCCAATGCTGTTGCTTCTAAGTTCGTTTGCGTGAGATGCATCAAATCATACCGCAAGGAGGCCAAGAAACAGCCCGACTCTGTTGAACAAAAGATCCACCCTATGGATGAACCAAGAAACTACGTTGCTGATGAAGCAAAAAATCACCCTATGGATGAATCGAAGAACAACAACGTGGAAGAAGCAAGTATAACATGTAAACAGAACTCAATCGATGAAGCAAGAACCCCCAGTAAAGCAAAAACATCGTGCAGGGGTGAGGTGGTGGCTGCAGACAGTCCCGCAGTTGCTTGCAACCTGGCTCTAAATTTTGGCGTACGTTGA 2289 0.4543 MVVNERPSKRMKRRVSADLYDFLTFPAAGDRCCDDVVGGGKPFRKTVQRFLTNYAMVTYPPSLFSSLMTWQMLFRIGGLVDGSDLSPAIVTLDIVEENVTRSRASVYCDQCRVVGWSGHPVCRKRYHFIIRASSNHMDAYERPCSLCGKSTQLSEARCKWCDAVITVEDLEDWVYSQIEDNTHVLHGIVHSNGYGHLLTLNGREGGSKLLSGSDIMSFWDRLCVALAVRKVSVMDLSKKFGMEYRLLHAITYGCSWYGNWGYEFGTGSYALTQDSYQKAVNTLSSMPLSDLLFQDRGPRSRLQCVIALYQSLADADLLTIKDLFFFLVTLIREFHKPLTSGTSNAESCNVLCAWTSNDVEAVQQALIKVLLASAASSGAKWVTRRALKGALSRGVASSELLDYSLKHLGGKSAAYGMVVRSRCNPTSSAVEFRLETLNVTEKEVSANSGYPSKEQVIADLKFLFDSIIHPESMVSYRPKVMRKRVADSARKLLDCKQFMKDYKPNDKMTGEQVPPCIRLWCHVELSDQPKDDPNPPPELILLPLNATVADLKNEATDTFQEVYAMYKRFQAEELLEYGSIKDILTVKLLLGTSGSVRILGKCPAKHGLNRFRMERGMETWKVDCPCGAKDDDGEKMLACDTCGIWQHTRCAGIDNSNAVASKFVCVRCIKSYRKEAKKQPDSVEQKIHPMDEPRNYVADEAKNHPMDESKNNNVEEASITCKQNSIDEARTPSKAKTSCRGEVVAADSPAVACNLALNFGVR 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0024 762 CDD PHD_MMD1_like 623 668 - -
Lele10g0024 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 675 IPR013083 -
Lele10g0024 762 SUPERFAMILY FYVE/PHD zinc finger 614 671 IPR011011 -
Lele10g0024 762 SMART PHD_3 623 669 IPR001965 -
Lele10g0024 762 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Lele10g0024 762 Pfam PHD-finger 624 670 IPR019787 -
Lele10g0024 762 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0024 Lele-ChrLele10 150076 153098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0024 86 668 PHD Transcription Factor Family AT5G22260 29.194 1.71e-81 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele10g0024 PHD 9e-09 CL0390