Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1311 ATGCCTCTTCCTACTAAATCAATCAAGGCTGCTCAGGAAGGCGGTGGCACCGTCAAGGATTTCGAAGATCCTGAGACCCCTTCCAATAATCTATGGGTTGGCAATTTACCGCACGAGGTTACAGAGTCCGATCTTATGGCTCTCTTCTCCCAATACGGCGCTCTTGATAGCGTCACGTTGTATTCATCTCGGAATTACGGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGAACGCGTTACAAGGCACTCTTCTGCGCGGAATTCCCTTGAAGATGGAATTTGCGAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTATAAAGGACGAACTGGAGGCTGAGTTTCACAAATTTGGTAAGATTGAGGATTTTAAGTTCATCAGAGACCGCAGCACTGCATTTTTGGAATATTTCAATTTAGATGATGCAATTCATGCCATGAAAATGATGAATGGAAAGCGTATCGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCACAATCATCAAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATTATTGGCCCTCCTGATTTCTATGCTGGTCAGAAAAGACCACTGCAAACACAGCCTTCAGTTGGGATGAAGGCAGATAGTCAACCCACCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTCGAATTTAGGAGTGTGGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGGCTTTTCAATGATCCTCGGATTACTATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGACCTAAAACTGACATGTTTGTAACTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGGCCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGCCAGATAGCACCAGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTCGGTCCTCAAGGTAGTCTTGAACCTTTGCTTTCAGGCAGTGAATTTAATGAACTGGGCACAAACCAAAAGTTTCAGGATGGTAGCTCCAAAAATCAAATGGGTCCAAATTGGAAACGGCCGTCTCCTCCAGCACCTGGGATGCTCCATTCTGCACCGGTTATTAGACCTACTACTAGATCCACATCTAGCGCATGGGATGTGCTTGACATAAACCAGTTTCAGAGGGATTCTAAGCGTTCAAGGATAGATGGTGCTTTACCTGTTGATGATGCTCCTTTTCCTTTAAGGAACGTTGATGATCGTGCAGTAGGGTTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGTCTCACCCTGGTCCAGTGGGCACAAGGATCTCAACTGGAGTGCCTGCTACTGCTCAAGTTGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTATTGGTTTTGATATTGTCTTCTTTCTACCAGACAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGTTACCTTGGCGCTAAAAACCGTGCTGGTGTTGCCAAATGTGTTGATGGTACCACTCTATTTTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTCGCAGGGCCAGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAGGTGGTACATCATTGCAACAGCCTCTGCCCTTGTCTATACCTTCGACTCAGTATATTGATAGGAAGCAGGTTCCTCCTTCTCAAGTAGAGTATGGTCAGATCCCTGCAAAGGAGGAAGAAGTTTTGTCTATGGATTATAATAGATTGTTGCATGATGAGTCTAAAGTTCCTTCAAAACCACTTTATCCAGCAACAAGTGGCGCCTCTTTAGTTCAGTCTGTACCCTCAGATTATACTTCTAGCAATACTGCTGCAGTGACCCAACCTGGAGTTACGTTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTGCTTCCTGGAACTACACAATCAGCTGCCACTGATGGTGCCAAGTCAGCAGTAGGATCCTCAAGCATGAAAGCTCCATTTCCTCCAGTTGTGCCCACTGACGGAAACCAATCTCATGTATGGAAACAGGACCATCAAATTGCTGATCCATCCAGCCATGTCCTTCAACAGGCAGATAGTACATACTATCAACCTTATTCACTATCATCTGCTTATGGCCATCCTGGTCAAGTGGTCCCTGGCAGTTCAAACATCCAGGATTCTGCTGCCAGCTTACAGCAGCAGGTTGGCATCTCATCTAGACCCATGAGTAACTTCTTGATGCCTTCTCAAAGCGGACAAGCAACTTTATCCCTCCCAGTGAATCAACCATATCAGATTGATGTCTCCTCCAGCTCTCAGAAAGGCTATGGAGTGGTGCCAGGAATAGAGGCCTCTGTTTTATATAGTTCTCAGGCTTTTCATAATCCTAATATTTCTGTTTCCTCGTCTAATCAAGTTCATGGTGCTAACCCTTCTCAGCAACAAACTGCTATGCCATATTCAGCAGACAAAGTGAACACAGAGCCTCCAAATCAGCAGTTTCAAGCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCAGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAGCAACAAACCCAAGGAGGGCGCAGGGCTGGAAATCAACAATGA 2994 0.4489 MPLPTKSIKAAQEGGGTVKDFEDPETPSNNLWVGNLPHEVTESDLMALFSQYGALDSVTLYSSRNYGFVFFKRVEDAKAAKNALQGTLLRGIPLKMEFARPAKPCKQLWVGGISPAVIKDELEAEFHKFGKIEDFKFIRDRSTAFLEYFNLDDAIHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQFQGKIIGPPDFYAGQKRPLQTQPSVGMKADSQPTNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFPGSKGPKTDMFVTEQTFRPLQMDVFGHNRPMVPNNFPGQIAPGVIVGPNVPLRPFGPQGSLEPLLSGSEFNELGTNQKFQDGSSKNQMGPNWKRPSPPAPGMLHSAPVIRPTTRSTSSAWDVLDINQFQRDSKRSRIDGALPVDDAPFPLRNVDDRAVGLEQSYGMEPVIDGGSGPFVNIQGKSHPGPVGTRISTGVPATAQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKCVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPGGTSLQQPLPLSIPSTQYIDRKQVPPSQVEYGQIPAKEEEVLSMDYNRLLHDESKVPSKPLYPATSGASLVQSVPSDYTSSNTAAVTQPGVTLTPELIATLASLLPGTTQSAATDGAKSAVGSSSMKAPFPPVVPTDGNQSHVWKQDHQIADPSSHVLQQADSTYYQPYSLSSAYGHPGQVVPGSSNIQDSAASLQQQVGISSRPMSNFLMPSQSGQATLSLPVNQPYQIDVSSSSQKGYGVVPGIEASVLYSSQAFHNPNISVSSSNQVHGANPSQQQTAMPYSADKVNTEPPNQQFQAALQGASQGTSSEVEADKNQRYQSTLQFAASLLLQIQQQQQQQTQGGRRAGNQQ 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1311 997 Pfam SPOC domain 516 631 IPR012921 -
Lele09g1311 997 SUPERFAMILY RNA-binding domain, RBD 103 184 IPR035979 GO:0003676
Lele09g1311 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 99 - -
Lele09g1311 997 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Lele09g1311 997 SMART rrm1_1 30 97 IPR000504 GO:0003723
Lele09g1311 997 SMART rrm1_1 227 295 IPR000504 GO:0003723
Lele09g1311 997 SMART rrm1_1 107 174 IPR000504 GO:0003723
Lele09g1311 997 CDD RRM3_Spen 228 297 - -
Lele09g1311 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Lele09g1311 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Lele09g1311 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Lele09g1311 997 CDD RRM3_Spen 108 177 - -
Lele09g1311 997 Gene3D - 5 104 IPR012677 -
Lele09g1311 997 MobiDBLite consensus disorder prediction 1 29 - -
Lele09g1311 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
Lele09g1311 997 MobiDBLite consensus disorder prediction 754 773 - -
Lele09g1311 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Lele09g1311 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Lele09g1311 997 FunFam Flowering time control protein FPA 21 103 - -
Lele09g1311 997 CDD RRM3_Spen 31 100 - -
Lele09g1311 997 Gene3D - 206 302 IPR012677 -
Lele09g1311 997 Gene3D - 105 185 IPR012677 -
Lele09g1311 997 SUPERFAMILY RNA-binding domain, RBD 18 103 IPR035979 GO:0003676
Lele09g1311 997 FunFam flowering time control protein FPA 219 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1311 Lele-ChrLele09 21765186 21771996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1311 30 195 Eukaryotic Initiation Factors Gene Family AT2G36660 27.869 5.85e-13 70.9