Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1286 ATGAACCCTCAGTCCCAGAAGGGAATATCAGAAGCTAGTAGAATGCATGATCTTAAGACCCCTTTGTTGCAGACTCCACAGGATGCCACTCTCAGGGAAGTTAAGTTTAGAATACAAGATATTACTTGTGCATCCTGTGTAAATTCAATAGAATCTGTAGTTGGAAACCTTGATGGAGTTAATGGTGTTATGGTGTCAGCAATTGATGGCAAAGCTACAGTCAAATATGTGCCAAAGCTCATTAGTGTCAAGAAAATAAAAGAAACTGTAGAAGAAGCAGGTTTTAAAGTTCACGAGCTTTCAGAGCAAGAAATATCAGTATGTAAGGTCAGGATTAAAGGAATGGCGTGCACAAGCTGCTCTGAATCTGTCGAGCGTGCTCTTCAAATGGTCGATGGTGTGAAAAAAGCAGCAGTAGGCCTGGCTTTAGGAGAAGCAAAAGTGCATTTTGATCCTAATCTCACTGATACAAACAAAATAATTGAAGCAATAGAAGATTCTGGCTTTGGGGTAGATCTCATTAGCTCGGGGACTGATGTGAACAAAATGCATTTAAGACTTGAAGGACTTGATTCTCCAGAGGATGCTAATGTAGTAATGTCATCTCTTGAATTAGCCGAAGGTGTAAATCATGTTGAGATGGACTTGACAGGACGTAAAGTTACAGTTACCTATGATCCAGATGTTACAGGTCCCAGATCTCTTATACAGTGCATTCGAGCAGCTGCTCGTGGCCCCAATGGATATCATGCAACCTTGTATTCTCCTTCAAGACAAAGGGAAACAGGGAGCATGGATGAAATTCATATGTATAGGGATCAATTTTTGTTCAGCTGCTTATTTTCAGTTCCCGTGTTCTTATTTGCCATGGTACTTCCCATGCTTCCTCCTTATGGAAACTGGTTGAACTATAAGATCCACAATAGTTTAACTATTGGAATGTTTCTAAGATGTATCCTTAGCACACCTGTTCAGTTCATAGTTGGGAAAAGGTTCTATGTTGGATCATATCATGCACTGAGGCGAAGATCTGCTAACATGGATGTGCTGGTTGCACTTGGATCTAATGCTGCTTCCATGTTAATATCCTTTATTCTCTTGGGAAAATATTTGGAGGTTGTGGCTAAAGGGAAAACGTCAGATGCTTTGGCAAAGTTGACACAACTTGTTCCTGATAAAGTTTTTTTATTAGCCCTGGATGCTGATGGAAATGTCATCTCTGAGACAGAAGTCGACACTCAACTTATACAAAGGAATGACATAATTAAAATTATTCCTGGGGCCAAAATTCCTGTAGATGGTATTGTTATCCAAGGGCAAAGTTATGTAAATGAAAGTATGATCACGGGTGAGGCAACACCTATTGATAAAAGTCCGGGAGACAAGGTTATTGGTGGGACCGTGAATGAGAATGGCTGCTTACTGGTTAAGGCCACACATGTTGGAACAGAAACTGCACTTTCTCAAATTGTTCAGCTTGTAGAATCCGCTCAACTCGCTAAAGCACCGATTCAAAAACTTGCTGACCAAATTTCAAAAGTTTTTGTTCCAATAGTGGTTGTTGCAGCATTCATAACCTGGCTGGGATGGTTTATTCCAGGGGAAGCTGGCATTTATCCTAAGTATTGGATACCAAAAGCTATGGATGCGTTTGAGCTTGCTTTGCAGTTTGCTATTTCAGTTCTAGTTGTTGCCTGCCCATGTGCTCTGGGTCTAGCGACCCCAACAGCAGTCATGGTTGCTTCAGGTATGGGTGCTTCTCAAGGGGTACTCATCAAGGGAGGGGATGCACTGGAAAAGGCACACAAGGTTAAAGTTGTTGTGTTTGATAAGACAGGGACACTTACCATTGGAAAACCAGAGGTAGTTAGTGCGGTGCTATTTTCTGAATTGTTGATGGAGGAGTTATGTGACGTGGCTATTGCCGTGGAGGCAAGCAGTGAACACCCAATAGCAAAAGCTGTTGTGGTTTATGCAAAGAGGCTGCGCCAGAAGTTTGGGTCTAGTGCTGAGCAAGTCTTTGATGTGAAGGACTTTGAGGTGCACGTTGGGGCTGGGGTAAGTGGAAAAGTTGGTGGGAGAACGGTTTTAGTTGGGAACAAACGACTAATGCATTCTGGTAACGTTCCAATACGTCACGAGGTTGAAAGGTATCTTTCTGAAAATGAAGTTCTGGCCAGAACCTGTGTGTTAGTTTCAATTGACGGAAAGATTGCTGGAGCTTTCTCTGTAACTGATCCTGTAAAGCCTGGGGCTAAGCGTGTGATATCTTTTCTCCACACAATGGGCATCTTAAGCATAATGGTGACCGGCGATAACTGCGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGACGAGGTCTTTGCTGAGACTGATCCACTGGGAAAAGCAGATAAGGTTAAAGACTTGCAGATGAAAGGCATGGTGGTGGCAATGGTGGGCGATGGAATCAATGACTCACCGGCTTTAGTCGCTGCTGACGTGGGCATGGCAATTGGTGCGGGAACTGACATAGCCCTAGAAGCAGCTGACATAGTTCTGGTCAAAAGCAGCTTGGAAGATGTAATTACAGCCATAGATCTGTCGAGAAAGACAATGTCTCGAATCCGTCTCAACTATATCTGGGCCCTTGGTTACAACATTCTTGGCATGCCAATTGCCGCTGGCATTTTGTTCCCCTTCACCGGAATCAGGTTGCCGCCGTGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTCAGCGTTGTCTCTTCCTCTCTCTTGTTGCAGCTCTACAAGAAACCTTTGCACGTGGCATCCACTTGA 2811 0.4354 MNPQSQKGISEASRMHDLKTPLLQTPQDATLREVKFRIQDITCASCVNSIESVVGNLDGVNGVMVSAIDGKATVKYVPKLISVKKIKETVEEAGFKVHELSEQEISVCKVRIKGMACTSCSESVERALQMVDGVKKAAVGLALGEAKVHFDPNLTDTNKIIEAIEDSGFGVDLISSGTDVNKMHLRLEGLDSPEDANVVMSSLELAEGVNHVEMDLTGRKVTVTYDPDVTGPRSLIQCIRAAARGPNGYHATLYSPSRQRETGSMDEIHMYRDQFLFSCLFSVPVFLFAMVLPMLPPYGNWLNYKIHNSLTIGMFLRCILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGSNAASMLISFILLGKYLEVVAKGKTSDALAKLTQLVPDKVFLLALDADGNVISETEVDTQLIQRNDIIKIIPGAKIPVDGIVIQGQSYVNESMITGEATPIDKSPGDKVIGGTVNENGCLLVKATHVGTETALSQIVQLVESAQLAKAPIQKLADQISKVFVPIVVVAAFITWLGWFIPGEAGIYPKYWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTIGKPEVVSAVLFSELLMEELCDVAIAVEASSEHPIAKAVVVYAKRLRQKFGSSAEQVFDVKDFEVHVGAGVSGKVGGRTVLVGNKRLMHSGNVPIRHEVERYLSENEVLARTCVLVSIDGKIAGAFSVTDPVKPGAKRVISFLHTMGILSIMVTGDNCATATAIANEVGIDEVFAETDPLGKADKVKDLQMKGMVVAMVGDGINDSPALVAADVGMAIGAGTDIALEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGILFPFTGIRLPPWLAGACMAASSLSVVSSSLLLQLYKKPLHVAST 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1286 936 PRINTS Copper-transporting ATPase 1 signature 33 58 - -
Lele09g1286 936 PRINTS Copper-transporting ATPase 1 signature 130 151 - -
Lele09g1286 936 PRINTS Copper-transporting ATPase 1 signature 59 82 - -
Lele09g1286 936 CDD HMA 185 252 IPR006121 GO:0046872
Lele09g1286 936 ProSiteProfiles Heavy-metal-associated domain profile. 107 173 IPR006121 GO:0046872
Lele09g1286 936 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 357 932 - -
Lele09g1286 936 Gene3D - 376 498 - -
Lele09g1286 936 SUPERFAMILY HMA, heavy metal-associated domain 178 255 IPR036163 GO:0046872
Lele09g1286 936 FunFam ATPase copper transporting beta 29 102 - -
Lele09g1286 936 SUPERFAMILY HAD-like 606 921 IPR036412 -
Lele09g1286 936 SUPERFAMILY HMA, heavy metal-associated domain 28 102 IPR036163 GO:0046872
Lele09g1286 936 SFLD p-type atpase 590 867 IPR044492 -
Lele09g1286 936 Pfam E1-E2 ATPase 407 586 - -
Lele09g1286 936 Pfam Heavy-metal-associated domain 186 242 IPR006121 GO:0046872
Lele09g1286 936 Pfam Heavy-metal-associated domain 36 96 IPR006121 GO:0046872
Lele09g1286 936 Pfam Heavy-metal-associated domain 110 169 IPR006121 GO:0046872
Lele09g1286 936 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 354 924 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele09g1286 936 FunFam Copper-transporting ATPase 1, putative 376 498 - -
Lele09g1286 936 Gene3D - 27 105 - -
Lele09g1286 936 SFLD Haloacid Dehalogenase 590 867 - -
Lele09g1286 936 CDD HMA 35 98 IPR006121 GO:0046872
Lele09g1286 936 ProSiteProfiles Heavy-metal-associated domain profile. 182 248 IPR006121 GO:0046872
Lele09g1286 936 FunFam Probable copper-transporting ATPase HMA5 736 872 - -
Lele09g1286 936 Pfam haloacid dehalogenase-like hydrolase 604 829 - -
Lele09g1286 936 Gene3D - 599 865 IPR023214 -
Lele09g1286 936 ProSiteProfiles Heavy-metal-associated domain profile. 33 99 IPR006121 GO:0046872
Lele09g1286 936 TIGRFAM TIGR00003: copper ion binding protein 110 171 IPR006122 GO:0005507
Lele09g1286 936 TIGRFAM TIGR00003: copper ion binding protein 34 97 IPR006122 GO:0005507
Lele09g1286 936 ProSitePatterns Heavy-metal-associated domain. 112 141 IPR017969 GO:0046872
Lele09g1286 936 Gene3D - 106 177 - -
Lele09g1286 936 SUPERFAMILY Calcium ATPase, transduction domain A 409 494 IPR008250 -
Lele09g1286 936 Gene3D - 180 255 - -
Lele09g1286 936 FunFam Copper-transporting ATPase HMA5 105 176 - -
Lele09g1286 936 SUPERFAMILY HMA, heavy metal-associated domain 104 176 IPR036163 GO:0046872
Lele09g1286 936 ProSitePatterns E1-E2 ATPases phosphorylation site. 610 616 IPR018303 -
Lele09g1286 936 Gene3D - 619 748 IPR023299 GO:0000166
Lele09g1286 936 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 361 893 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele09g1286 936 CDD P-type_ATPase_Cu-like 275 911 - -
Lele09g1286 936 SUPERFAMILY Calcium ATPase, transmembrane domain M 360 602 IPR023298 -
Lele09g1286 936 CDD HMA 109 171 IPR006121 GO:0046872
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 815 834 - -
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 838 850 - -
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 740 751 - -
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 608 622 - -
Lele09g1286 936 PRINTS P-type cation-transporting ATPase superfamily signature 762 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1286 Lele-ChrLele09 21566720 21571316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1286 36 930 Primary Pumps ATPases AT1G63440 55.771 0.0 1029