Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1269 ATGTCATCCCCTACGCCGTCGTATTGGTGTTACAGATGCACCCGGTTTGTGGTCCTCTCCAATGCTCCCAACCGCATTGCTTGTCCCCACTGCCGAACTGGCTTCCTCGAAGAAATCCTCTCCAATCCATTATCCGACCGTCGTCTCACCCCGTCTCCATCTTCCACCTTGTCCGTCTTCTCCCTTGAACCTCCAAGTTCCCTCCATTTAAGGAGACAAGGATTCCGGAGGAGACGCCGTAATGCCGGCAGCCGCTCTTCCTTTAACCCATTGATTGTCCTCCGCGGACCCGCCCATGGTGGTGTTGGACAAGACGGTGGAGATCATGAAAGAAGTAGTAGCTTCCAATTGTACTATGATGACGGTGATGGCTCCGGTCTCCAACCGTTACCGCCGAATATGTCGGATTTCTTGCTCAGGTCAGGCTTCGATAGTTTGTTGGAGCAGTTTTTGCAGACAGAAAATAACGGCCTCGAGCGGCTGGAGAACCTGCCGGCGTCCAAAACAGCCATCGGATCAATGCCGACGATTGAGATAGGGGAGGACCATGTGAGTGCGGATTCACACTGTGCCATTTGTAAAGAAGCGTTTGAGCTAGGCTCAGAGGCACGCGAAATGCCTTGCATGCATATTTACCATTCGGATTGCGTTGTTCCGTGGCTATCAACGCGCAATTCATGTCCTGTGTGTCGCAACGAGTTGCCTTCGGATGGAAACCATCTGGAAGGTAGAGTGTCAAGGCAAACCGATCAAGAAACGGTCGGATTAACGATATGGAGACTACCAGGAAGAGGCTTCGCCGTCGGAAGGTTTCCCTACGATCACGGTGACGGCGAGAGTCATTGGCCAGTTGTATACACAGAAATGGATGATGCGCTCGGCGCACTTGGCGTTCCCAGAAGAGTTTCCCGGGCACTGAGAGGTATTAGACTTAGCGAAAGTCGGGGATTGAGCAGAATGTTTCAAAACTTCTGGGCATTCCTCAGGAGGCTTGGGTCTAGGTCGTCAACTTCCATTTCTCAGAATGGGCCCATGAATAGAGGCCTCAGGCAAATGAGTTCGGTATTCAGTACGAACTCGCAAAGCCGAAGAAGAACTAGGGCAGTGGAAGATTAA 1116 0.5188 MSSPTPSYWCYRCTRFVVLSNAPNRIACPHCRTGFLEEILSNPLSDRRLTPSPSSTLSVFSLEPPSSLHLRRQGFRRRRRNAGSRSSFNPLIVLRGPAHGGVGQDGGDHERSSSFQLYYDDGDGSGLQPLPPNMSDFLLRSGFDSLLEQFLQTENNGLERLENLPASKTAIGSMPTIEIGEDHVSADSHCAICKEAFELGSEAREMPCMHIYHSDCVVPWLSTRNSCPVCRNELPSDGNHLEGRVSRQTDQETVGLTIWRLPGRGFAVGRFPYDHGDGESHWPVVYTEMDDALGALGVPRRVSRALRGIRLSESRGLSRMFQNFWAFLRRLGSRSSTSISQNGPMNRGLRQMSSVFSTNSQSRRRTRAVED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1269 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 237 IPR013083 -
Lele09g1269 371 Pfam Ring finger domain 189 231 IPR001841 -
Lele09g1269 371 Pfam Protein of unknown function (DUF1117) 254 358 IPR010543 -
Lele09g1269 371 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Lele09g1269 371 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Lele09g1269 371 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Lele09g1269 371 MobiDBLite consensus disorder prediction 335 371 - -
Lele09g1269 371 MobiDBLite consensus disorder prediction 99 118 - -
Lele09g1269 371 SUPERFAMILY RING/U-box 170 237 - -
Lele09g1269 371 MobiDBLite consensus disorder prediction 335 363 - -
Lele09g1269 371 CDD RING-H2_RNF126_like 190 231 - -
Lele09g1269 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 235 - -
Lele09g1269 371 SMART ring_2 190 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1269 Lele-ChrLele09 21449062 21450177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1269 127 242 C3H Transcription Factor Family AT5G01980 45.690 1.60e-29 117