Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1258 ATGACGGCAACTAAGGCTACTGGATCTGCGAGGGATCTTCTGTGGCTAGTAGCTGCCAAGTCTGACTTTGCTGCTACCTCTGGATTCCCGGATCCAAATGCAGCTCGTGATTTCCTGAACGGACACAAAATAGATGGTTCCCCCATCTTCTCTGATACGAATCAATACCTGAATCTTGGAGATGAATGGAATCCTGACGAAGCCCATCAGAACGTTCTTAATTTCTACCGTGATATTTTTCATCAACCTCATGTGGACCCACTTAGTTATGCTCCGCACACAAGCTTGATTTCTGAAGGAGCACCGTTTAATCCACCTGTGGAAGGTATGCCAGATGTCCCGTATTCAGCCGCGACTTCGGCTCCGGATCCTTCTCTGGAAGACTACGATTTTTCAGAAACCATCAAGTACATGACCCAAGTTCTCATGCAAGAGAACTTGGAACAGAAGCCGTGCAAGTTTTATGATCCACTTAGTCTAAAACTTACTGAGAAATCATTCTATGATGCTCTTCGATACAACAACCCTCTCTCCCCTAATGAGCACCCTCTCCTTGACATTGTTGAGAGCCCAGATGGTAATTCCTCTGGAACTGCTACTGATGCTAGTACTGGAGGTGGCCGCACCAGCACGAGCACCAGCGACTCAGAATTAAGGCCCTCTTCGCCGGAGACACCTGTTTTGGGAGATTATGCTTTCCAGTTCAAACCGCTATCCATATCTCAGCAGTCCTCACAACCTCCAAACACTTCAACTACTATCAGGAATGGACTGCTGAATTTGGATTCTTCTATCACTCAGCTTTTGGCTCAAAATATCTTTAGTGATGCAGAATCTGTCTCGCAATTCAATGGAGGCCTAGAGGAAGCTAGAAAATTTCTTCCTAAAGGCGCTCAACTCGTCGCTGGTCTGGAGAGCACCACAGGGTCTGTACGATCAAAGGGGGTGGGAGAAAAGGCGGCGCTAAATATAGATAAAGATGCTGGGGAGAATTTGCATGGGTTAAAGGGCAGAAAGAATCATGACCGTGATGGCAGTGTTGATGAAAAAGAAGGGAGAAGCAGCAAGCAGTCAGCAGTGTATGTTGATGAGAGTGATGAATTATCGGAGATGTTTGACAAAGTGTTGCTTAGTGTTGAGAATGTTTCATTATGTCCAGAGCACGAAAGCTTGCCCCATGGATCAACGAAAGGCTTACAGCCAAGTGAGCAGGCTGTGGAATCATCTGATGGAGGGAAGACGCGCTCTAAAAAACAAGGCAGGAAGAAGGAAACTGTGGATTTGAGGACACTTTTGGTTTTATGTGCACAAGCTGTGTCTGCCAATGATAGAAGGACTGCTCATGAATTACTAAAGGTGGCTCATTATTTCGCCAATGGCCTTGAGGCACGTTTAGTAGGTGGTGGTGCTGGAACCCAGCTATTTTATACTTCTCTGAGCTCCAAGAGGGTCTCTGCTGCTGAAATTATGAAAGCTTACCAAGTTTACATATCTGCCTCGCCTTTTGAGAAGTTTGCGCATTTCTTCGCAATAAAAATGATTTTAAAAGCAGCTGAGAAGGCAGAAACCGAGGCACTGTTCCATTTCTCCGCACTGTATGATATGTTTGATACTTTGGTGCCCCGGGAAAACCAATGGAGGTTGATGCTTGAGAAAGAAACTTTTGGTCGGGAGGCGATGAACGTTGTGGCGTGTGAAGGATTAGAAAGGGTTGAGAGGCCTGAGACACAAACAATGGCAGGCAGGGGTTGCAAGGGAAGGTTTCAAGCGGCTGCCACTAAGGAGCGTATTGTGACGACTCAGAAGGCTGGAAGGGACGCGTTTTGTTTGCTTCCACTCGTTGGATTCCAGCATAATGCAGTGTGGCCTTAG 1872 0.4653 MTATKATGSARDLLWLVAAKSDFAATSGFPDPNAARDFLNGHKIDGSPIFSDTNQYLNLGDEWNPDEAHQNVLNFYRDIFHQPHVDPLSYAPHTSLISEGAPFNPPVEGMPDVPYSAATSAPDPSLEDYDFSETIKYMTQVLMQENLEQKPCKFYDPLSLKLTEKSFYDALRYNNPLSPNEHPLLDIVESPDGNSSGTATDASTGGGRTSTSTSDSELRPSSPETPVLGDYAFQFKPLSISQQSSQPPNTSTTIRNGLLNLDSSITQLLAQNIFSDAESVSQFNGGLEEARKFLPKGAQLVAGLESTTGSVRSKGVGEKAALNIDKDAGENLHGLKGRKNHDRDGSVDEKEGRSSKQSAVYVDESDELSEMFDKVLLSVENVSLCPEHESLPHGSTKGLQPSEQAVESSDGGKTRSKKQGRKKETVDLRTLLVLCAQAVSANDRRTAHELLKVAHYFANGLEARLVGGGAGTQLFYTSLSSKRVSAAEIMKAYQVYISASPFEKFAHFFAIKMILKAAEKAETEALFHFSALYDMFDTLVPRENQWRLMLEKETFGREAMNVVACEGLERVERPETQTMAGRGCKGRFQAAATKERIVTTQKAGRDAFCLLPLVGFQHNAVWP 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1258 623 MobiDBLite consensus disorder prediction 101 126 - -
Lele09g1258 623 MobiDBLite consensus disorder prediction 191 221 - -
Lele09g1258 623 MobiDBLite consensus disorder prediction 179 226 - -
Lele09g1258 623 Pfam GRAS domain family 436 522 IPR005202 -
Lele09g1258 623 Pfam GRAS domain family 523 577 IPR005202 -
Lele09g1258 623 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 387 521 IPR005202 -
Lele09g1258 623 MobiDBLite consensus disorder prediction 327 357 - -
Lele09g1258 623 ProSiteProfiles GRAS family profile. 419 623 IPR005202 -
Lele09g1258 623 MobiDBLite consensus disorder prediction 387 422 - -
Lele09g1258 623 MobiDBLite consensus disorder prediction 327 364 - -
Lele09g1258 623 MobiDBLite consensus disorder prediction 395 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1258 Lele-ChrLele09 21375989 21380561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1258 134 601 GRAS Transcription Factor Family AT1G07530 36.398 2.32e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele09g1258 GRAS 1.9e-08 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1442 31 19913176 19914368 Lele09g1258 09 21375989 21380561 CCT
Lele09g1258 09 21375989 21380561 Lele11g1261 11 19557450 19560432 hybridization
Lele09g1258 09 21375989 21380561 Lele12g0061 12 555882 558233 hybridization