Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1235 ATGGGTCCTGTGAGAGGTTTGAAAAAGAGGAAAAAGCCTGAGAAGAAGTACGACGAGAATAGTTCTGCTTCTGATTTGCCGGCGAAAGAGGGCCCGCTAGATTGGTGGATTGAGTTCTCAAGGAGGATTAGTGATCTTCATCAGTCTCCACCAAAGGAGTTGGATAACTTTGAATCTATTTTTAAGATCTCCAGAAAGACTTTTGAGTACATATGTTCACTGGTGAAGGATGATATGAAGGCAAAATCGGCGCATTTCGTGTTTACTAACAGCAAGCCAATGTCTTTATATGATCAAGTAGCCGTAGCGTTAAGACGACTAGGATCTGGTGAGTCACTAGTCACCATCGGCGATTCCTTTGGGCTGAATCACTCGACCGTTTCACAAGTGACTTGGCGATTTGTTGAATCTATGGAAGAAAGGGGTCTTCAGCATCTGCAATGGCCTTCTACAGAAGCAGAAATTATATCAATCAAGTCCAAATTTGAGAAAGTATGGGGCCTCCCCAATTGCTGCGGTGTAATTGATGCTACTCACATCACGATGTGTTTGCCTGCCTCAGAACCTGCTAGTAATGTGTGGCTGGATCACAAGAAGAATCACAGCATGGTGTTGCAGGCAATAGTAGATCCTGACATGAGGTTCAGGGACATCGTCACCGGCTGGCCCGGCAGAATGAAGGATTGGTTGGTTTTTGAGAGTTCCAATTTCTACAAACTCTGTAACAAAGGAGAAAGATTGAATGGGAAGAACTTGCTGCTTCCTGAAGGATTAGAAATAAGGGAATACATTATTGGGGATTCCGGTTACCCTCTACTGCCATACCTGCTAGTCCCTTATGAAGGTAAAGAACTTCCGGAGCCAAAAGCCGAGTTTAACAGGCGCCATTTCGCAACACGGATCGGGGCGCAGAGGGCACTGACACGGCTGAAGGAAATGTGGAGAATTATTCAAGGAGTGATGTGGAGGCCTGATAAACATAAGTTGCCCAGGATTATTCTGGTTTGCTGCTTGCTTCACAACATTGTGATTGATATGCAAGATGAAGGGCAGGATGAGCTCTCTTTGTCTCACAGCCATGACTCTGGTTACCATCAACTGATTTGTGGAGCTGTCGACGTGAAAGGAGCGTCACTAAGAGATAACCTGTCTCTCTTCTTAACCGAAAGTTACTTTGTTCTCCCTTTTCTGCGAACTTCAACCTCGAATTTAATGGCAGTAGCCATGAAGAGAGAAAGAGATGAGAGTGAACCAGAAGGCTTAAACATGGTTAAGTGTTTGATGTTACTGTCTCGAGTTGGGGTGACGAGCCCTTCATCACAGGGTAGTGATGGTGGTTTTAAGTGCAAGACTTGTAACAGAGTGTTCCCTTCTTTTCAAGCTCTTGGAGGGCACAGAGCCAGCCACAAGAAGCCCAAGCTCATGCTTCCTTTGAAGCTCAACAAGATGCATCCATGTCCCATTTGCGGACTCCAGTTTGGAATCGGACAAGCCCTCGGAGGTCACATGAGAAAGCACAGAGCTCCTGTTCATAAGAATAATAAGTTTGATTTATGCTTGGACTTGAACTTGACGCCTTTAGAAAATGATCATCTCAACCTCAACTTGACCACACCCATCAAACAAGCAGTGGAAGATGAAAATGGAAAATCAGTTTCAGGAATTTCAAGTGTAAATTTGTCTCATTGGGAGAACAATCCTAATTTTAGTTCAGTTCCTAACCAATTTATCGGCCACCTATTTGGGTCTGAATCTAAGCCTGTCAATTTTGAGGAAAAGAATAGTTCTTACGTTGTGGATGATAATTCTAATGTGAGGATGAAAATGATAAGCAATCAATATGGAGAAGACGCGTCTGAAGAAACTGAAGCGCGTCTAAGCTTTGATGGAATTAAAAAAGTAATTCAGGTTAAGGACTCTGATAGTATACGGGCTGAAGGCAGACACAATTTGATCTGGCAGATTAACAGTGATCTACATCAGGCTTATAATGGTGAAGCTGAGACGGGTTATATGTCAGTAGGGCAAGCTTTTGATAAAGGCAGCAATGTCACTCTCATGGAACTTTCCTCCAACAGAGCGGATTCCCATGTTAGATCATTGAGTGAGGCCTATGGTAAAGGTGATGATAATGCCGTATCAGTTTGTGTTTCCTATAATAAAGAGGATACAAATACAATATCTTTTTGCGGGGTCCCAGATGAACAGGATATTATCCCCGTGGACAGGACTTCTGGCGACTTTGGGCCTTTATATAATCTATCTTCGGTTGAAGTATCAACAACAGCTAATGAGAGAGAGTTGAATGCATCAAATTGCAATGAAACTGTAAGTATTCCCAAGGTAGATAAACTAAAGCCTGAACCTGTGTCCAAGAATAAACCAGATCTCAAAGCAGCGAAGAAAGAAGCTCCAAACAGCTTCCCTTCTAATGTCATGAGCTTGATATCCACTGGTATGCTTGATGGCGTTCCTGTAAAGTATGTCTTGGTTTCCCGGGAGGAACTTAGGGGAATTATAAAAGGTTCTGGCTATCTTTGTGGGTGCCAATCATGTAATTATTCCAAGGAGCTGAGGAGTAGCCCTGAAAGTCTGTTGTTTGATACAATCCAAACAGTTTTTGGTGCTCTGATTAATCAGAAAGCGTTCCGCAATTGGAAAGAATCTTTTCAAGCTGCTGCACGTGAGCTTCAACGTATCTATGGAAAGAAAGAACCAAACATATGA 2727 0.4305 MGPVRGLKKRKKPEKKYDENSSASDLPAKEGPLDWWIEFSRRISDLHQSPPKELDNFESIFKISRKTFEYICSLVKDDMKAKSAHFVFTNSKPMSLYDQVAVALRRLGSGESLVTIGDSFGLNHSTVSQVTWRFVESMEERGLQHLQWPSTEAEIISIKSKFEKVWGLPNCCGVIDATHITMCLPASEPASNVWLDHKKNHSMVLQAIVDPDMRFRDIVTGWPGRMKDWLVFESSNFYKLCNKGERLNGKNLLLPEGLEIREYIIGDSGYPLLPYLLVPYEGKELPEPKAEFNRRHFATRIGAQRALTRLKEMWRIIQGVMWRPDKHKLPRIILVCCLLHNIVIDMQDEGQDELSLSHSHDSGYHQLICGAVDVKGASLRDNLSLFLTESYFVLPFLRTSTSNLMAVAMKRERDESEPEGLNMVKCLMLLSRVGVTSPSSQGSDGGFKCKTCNRVFPSFQALGGHRASHKKPKLMLPLKLNKMHPCPICGLQFGIGQALGGHMRKHRAPVHKNNKFDLCLDLNLTPLENDHLNLNLTTPIKQAVEDENGKSVSGISSVNLSHWENNPNFSSVPNQFIGHLFGSESKPVNFEEKNSSYVVDDNSNVRMKMISNQYGEDASEETEARLSFDGIKKVIQVKDSDSIRAEGRHNLIWQINSDLHQAYNGEAETGYMSVGQAFDKGSNVTLMELSSNRADSHVRSLSEAYGKGDDNAVSVCVSYNKEDTNTISFCGVPDEQDIIPVDRTSGDFGPLYNLSSVEVSTTANERELNASNCNETVSIPKVDKLKPEPVSKNKPDLKAAKKEAPNSFPSNVMSLISTGMLDGVPVKYVLVSREELRGIIKGSGYLCGCQSCNYSKELRSSPESLLFDTIQTVFGALINQKAFRNWKESFQAAARELQRIYGKKEPNI 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1235 908 Gene3D Classic Zinc Finger 445 506 - -
Lele09g1235 908 SMART c2h2final6 484 506 IPR013087 -
Lele09g1235 908 SMART c2h2final6 447 469 IPR013087 -
Lele09g1235 908 Pfam DDE superfamily endonuclease 175 341 IPR027806 -
Lele09g1235 908 ProSiteProfiles Zinc finger C2H2 type domain profile. 484 516 IPR013087 -
Lele09g1235 908 MobiDBLite consensus disorder prediction 785 804 - -
Lele09g1235 908 MobiDBLite consensus disorder prediction 1 29 - -
Lele09g1235 908 ProSitePatterns Zinc finger C2H2 type domain signature. 486 506 IPR013087 -
Lele09g1235 908 ProSitePatterns Zinc finger C2H2 type domain signature. 449 469 IPR013087 -
Lele09g1235 908 MobiDBLite consensus disorder prediction 785 801 - -
Lele09g1235 908 Pfam C2H2-type zinc finger 484 509 - -
Lele09g1235 908 Pfam C2H2-type zinc finger 447 472 - -
Lele09g1235 908 ProSiteProfiles Zinc finger C2H2 type domain profile. 447 474 IPR013087 -
Lele09g1235 908 SUPERFAMILY beta-beta-alpha zinc fingers 447 506 IPR036236 -
Lele09g1235 908 PANTHER UNCHARACTERIZED 46 366 IPR045249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1235 Lele-ChrLele09 21217156 21225746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1235 409 530 C2H2 Transcription Factor Family AT3G53600 46.795 2.24e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g1235 DDE_Tnp_4 4.5e-31 CL0219