Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1229 ATGTCTTCAAATTCCACGAAGCCTCTTGTGCCTTTGGAATGGAATGTACGGCAGACTACTACACTAATTATTGTCTGCATCGTTTTCCTGTTACTGAGTTACCACAGCGTATTGAAGCGTACATGTTGTGCAAATTCTTCTGGGAACCAAGCAAGCAGAAGGCGACTTCTAGAAGAGTCCATTCAAGATGATCCTTCTCCACCGTCTCAAAGCCATGGCTTGGAGATCTCTGTAATACATTCTCTTCCCAAGTCCATGTTTAAGAAAAATGAAGGGGAAGAGAAGCCGAACAGCGTAGACTGTGCAATATGCTTTGGTGAGTTTGAAGAAGGGGACTGGCTCAAATATCTTCCGAACTGCCACCATGTCTACCACGTTTCCTGTATTGACTATTATTGGCTTCGGTCCAGCTCAAATTGCCCTCTTTGCAGATCTCATGTTCTCCATAATCCTCTTCCCGAGGCTCTAACTGCTCTGCAGATGATATAG 489 0.4458 MSSNSTKPLVPLEWNVRQTTTLIIVCIVFLLLSYHSVLKRTCCANSSGNQASRRRLLEESIQDDPSPPSQSHGLEISVIHSLPKSMFKKNEGEEKPNSVDCAICFGEFEEGDWLKYLPNCHHVYHVSCIDYYWLRSSSNCPLCRSHVLHNPLPEALTALQMI 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1229 162 PANTHER RING-H2 FINGER PROTEIN ATL16 23 149 IPR044600 GO:0016567|GO:0016740
Lele09g1229 162 SUPERFAMILY RING/U-box 91 149 - -
Lele09g1229 162 SMART ring_2 101 143 IPR001841 -
Lele09g1229 162 Pfam Ring finger domain 100 144 IPR001841 -
Lele09g1229 162 ProSiteProfiles Zinc finger RING-type profile. 101 144 IPR001841 -
Lele09g1229 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1229 Lele-ChrLele09 21189391 21189879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1229 24 147 C3H Transcription Factor Family AT1G04360 39.850 6.88e-22 88.6