Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1221 ATGAATCACACCGTCGCCAGATTCTTAAGCGCTTCCGACTTCCTCGGTAATATGTCGCCGCCGTACGCAGGCTCATTTCCCGCAAAGGGTTTTCAGTGCCAACCGGAATCGGAGGTGAGCCACAGCAGTTGCAGCAGCGGGTGTAGCGGCCATGAATCGCCGACTTCTCTGATGAGTTACCAATGCATGTTCCAGAGGAGTACAAGCAGCCATTCTTTGCAGAGGAGTGGGCCCCACCACCCCGTTTCTGCTTCATTCGCCGACTTGCTGGAGGAGGCTCCGGTGAGAAAAGTTTACAGTGCCGGTGATTTGCAGAGGATGAACGGAATGCAAAGCAGTGTGCGGTCATTCTCAGGAAGTCCACTGAGGAGCGAAAGTAGTATGATCATCGAAGGAATGAGCAGAGCGTATCCTTATAGCCCGGAGGAGAAGAAGGTGAGGATTGAGAGATACAGAATCAAGAGACATAAGAGGAACTTCAACAAGAAAATTAAGTATGAATGCAGGAAGACATTGGCGGACAACAGGCCGCGCATCAGAGGAAGATTTGCAAAGAGTGAAGAAACTGAGAAGAAGAGTCATATGATTGAGAATGAGAGTAGAGAAGAGGAAGAAGATGAGAATTGGGCCAGTTTTTTTGAGAACTTGGTAGTTGCAAATCTTGTTCACGAACCATGA 678 0.4882 MNHTVARFLSASDFLGNMSPPYAGSFPAKGFQCQPESEVSHSSCSSGCSGHESPTSLMSYQCMFQRSTSSHSLQRSGPHHPVSASFADLLEEAPVRKVYSAGDLQRMNGMQSSVRSFSGSPLRSESSMIIEGMSRAYPYSPEEKKVRIERYRIKRHKRNFNKKIKYECRKTLADNRPRIRGRFAKSEETEKKSHMIENESREEEEDENWASFFENLVVANLVHEP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1221 225 Coils Coil 186 206 - -
Lele09g1221 225 MobiDBLite consensus disorder prediction 181 199 - -
Lele09g1221 225 Pfam CCT motif 146 186 IPR010402 GO:0005515
Lele09g1221 225 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Lele09g1221 225 MobiDBLite consensus disorder prediction 181 206 - -
Lele09g1221 225 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 36 208 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1221 Lele-ChrLele09 21109967 21110921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1221 132 196 C2C2-CO-like Transcription Factor Family AT5G24930 44.615 1.57e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele09g1221 CCT 2.4e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1221 09 21109967 21110921 Lele11g1220 11 19309342 19310226 hybridization
Lele09g1221 09 21109967 21110921 Lele12g0100 12 840542 841029 hybridization