Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1216 ATGGGTTGCTTTTGTTTTGCAAAGAAATCAAGCAGAAAATCGCAGGCCAACAACCACAGCCAGAGCGCAAAGACGAACAATCACACAGATACGGTGAAAGTTGATTCCAATGTGACTGGGGCGAAGGAAGCTCAGTCTAAGGATGATCAACTTTCTCTGGACGTGAAGAGATTGAATTTAACGGACAATGGATCCACTACTGGTAGCACGGCGCGGACTTTTTCTTTCGATGAACTTGCAGCAGCAACAGGAAATTTTAGGTCAGATTGCTTTCTGGGAGAAGGAGGGTTTGGCAAGGTTTTCAAGGGGCATTTGCAGAGAATAGACCAGGTTGTGGCTATAAAGCAACTCGACCTGAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAAGTTTTGACACTTAGCCTAGCAGACCACCCTAATCTTGTGAAATTGATTGGGTTTTGTGCTGATGGAGATCAGAGACTATTGGTCTATGAGTACATGCCTTTAGGATCTTTGGAGAACCACTTGCATGATCTTTCACCCGGTAGAAAACCACTTGATTGGAATACGAGAATGAAAATAGCAGCTGGAGCTGCGAAGGGATTGGAGTATTTACATGAGAAAATGAAGCCTCCTGTCATATACCGCGATTTGAAATGCTCAAACATTTTATTAGGTGAGGGATATCATCCTAAGTTATCTGATTTCGGCTTGGCCAAAGTAGGCCCAAGTGGCGATAAGACGCACGTTTCAACAAGGGTTATGGGCACATATGGTTACTGTGCTCCGGATTATGCAATGACGGGTCAGTTGACGTTCAAGTCAGACATCTACAGCTTTGGAGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCCATTGATAATACTAGACCTGGCAAAGAACAAAATCTGGTTGCATGGGCAAGGCCGTTGTTCAAGGACAGGAGAAAATTCTCGCAAATGGTAGACCCATTGCTTGAAGGCCAATATCCTTTGAGAGGTTTGTACCAAGCTCTAGCTATTGCTGCCATGTGTGTTCAAGAACAGCCTAATATGCGGCCGGTGATAACCGACGTGGTTACCGCATTAAACTACCTCGCCTCCCAGAGATATGATCCTCAGATTCATCAAGTACAGAACTCCAACAGAAGGGATGGTGATCAAAGACATCATGTTCGTAGTGGTTCTTCCTCAGACAGATCTGCAGACTAA 1203 0.4464 MGCFCFAKKSSRKSQANNHSQSAKTNNHTDTVKVDSNVTGAKEAQSKDDQLSLDVKRLNLTDNGSTTGSTARTFSFDELAAATGNFRSDCFLGEGGFGKVFKGHLQRIDQVVAIKQLDLNGLQGIREFVVEVLTLSLADHPNLVKLIGFCADGDQRLLVYEYMPLGSLENHLHDLSPGRKPLDWNTRMKIAAGAAKGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTRPGKEQNLVAWARPLFKDRRKFSQMVDPLLEGQYPLRGLYQALAIAAMCVQEQPNMRPVITDVVTALNYLASQRYDPQIHQVQNSNRRDGDQRHHVRSGSSSDRSAD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1216 400 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele09g1216 400 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Lele09g1216 400 CDD STKc_IRAK 92 361 - -
Lele09g1216 400 SUPERFAMILY Protein kinase-like (PK-like) 72 374 IPR011009 -
Lele09g1216 400 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Lele09g1216 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lele09g1216 400 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele09g1216 400 MobiDBLite consensus disorder prediction 375 400 - -
Lele09g1216 400 Pfam Protein kinase domain 91 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele09g1216 400 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Lele09g1216 400 Gene3D Transferase(Phosphotransferase) domain 1 163 387 - -
Lele09g1216 400 MobiDBLite consensus disorder prediction 379 394 - -
Lele09g1216 400 PANTHER OS07G0668900 PROTEIN 6 372 - -
Lele09g1216 400 FunFam probable serine/threonine-protein kinase RLCKVII 59 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1216 Lele-ChrLele09 21085582 21088472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1216 1 365 Glycoside Hydrolase AT3G07070 57.182 1.29e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele09g1216 Pkinase 4.4e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1216 09 21085582 21088472 Lele11g1216 11 19283065 19286652 hybridization
Lele09g1216 09 21085582 21088472 Lele12g0104 12 863055 868165 hybridization