Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1196 ATGAAAACCCCCTTTTGTCTTGGTGGAGGGCATCCCCCCACAGTGAAGGGAATTATTAACAGAGAAAAGATAAAGGTGAGGCATTGCAAAGGAGACAAGGGTGGGGGAAGCTACACTGGGGTGTTCATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTGCGATAGCCCCTGTGGTGAGCAAGGCGCTTGTGCTTCATGTTTCTCCTCTTCCACTTCTTCATCTTCCAATTCGCCTTCACATCGTGTTTCTTCTTCTTATCTTGAACTCTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTCCCTAACAAAGGAAATGTAGTAGTTTACTTTCCCCAAGGTCATCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCTCCCATGGACATGCCCACCTATGACCTTCAACCACAAATCTTCTGCAGGGTCGTCAATGTCCAGCTACTTCGTATTTGCTTTTTCCCTGAACAGGCCAACAAGGAGAATGATGAGGTTTACACGCAGGTTACCTTGCTCCCCCAGGCAGAGTTAGCAGGGGTGCACTTGGAGGGCCAAGAACTTGAGAAATTGGGAGCATATGAGGATGAAAATGGAGGATTACCTGCAAAATCAACCCCTCACATGTTCTGTAAAACGCTTACTGCTTCTGATACTAGCACTCATGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGCTTTCCTCCTCTGGATCATAAGCAGCAAAGACCCTCCCAAGAGCTTGTTGCAAAAGACCTGCATGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGACGGCATCTTCTCACAACCGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTATCTGGCGATGCAGTACTCTTTCTGAGGGGTGAAAGTGGAGAACTGAGATTGGGAATCAGGAGATCTGTTCGGCCGAGAAATGGTCTTCCTGAGTCAATTATCGGTGATCAGAATTGCTATCCCAATTTCCTATCTACAGTGGCTAATGCTATATCCACCAGAAGTGTGTTTCATGTTTTCTACAGCCCAAGGGCAAGTCATGCAGAGTTTGTTGTACCCTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGGACAAGATTTAAGATGAAATTTGAAATGGATGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTACAGATGGACTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATATTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCTGTTTCTCTCCCACCCTTGAGCATTCAGTCATCCCAAAGACTAAAGAAATTGCGGACAGGTCTGCAAGCAGCCACATCAAGTCACCTCATGACCGCAGGTGGCGGTGCATTTATGGACTTTGAGGAGTCTGTAATATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAACCACAACCAGCCAGATTTTGAGATGAGTCGTCTTGGTCATCCAAATGTTGCATCCACTGGATTAAGTAAAGCTACTGCTACTGAACTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTGCAGAGACTAATAAGTTTATGAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGCAATCCCTGAAAGGAAAAGCTGATTTTAACCTTGGAGCTTGGAGTAAACCCAATTCCAGTTGCACAACTTTCAACCGACATCAGCCATCCAAACCCAACTTCAACACTTTAGGATCAGAAAGCCTTCAAACTGCTTATTTCCCTTTCAGTGACGTTCATCGAGCTGGTCAAAGCCAAAGTAGCCTGTTGTGCTCTAAACCTGCAAATTTCCAGAGAGAGAATCTCCACACTCCTTCCACTCAGGCAGAGCTCTCAACAAAGGAAGTTGGACGGTCGGATCTCTCGAACAAGGATAAGATACAGGACAGTTTTTCTGCTGCTGCTGCTGCTTCCTTAGGAGTAACAAATCTAAGGATTCCAAATGATGAGAATTTTGAGGGAAAGGTAAATGGCTGTAAACTATTTGGGTTTTCCTTATCTGGGGAAGGCAACTCAAAGAATTTACAGAGCTCTGCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTAGGAAGAGCCATTGATCTCTCAAGACTTAGCAGCTACAATGATCTGTTGAGTGAACTTGAGCGACTGTTTGGCATGGAAGGCCTTATAAAGGATCCTGATAAGGGATGGAGGGTCCTCTACACGGATAGCGAAAACGACATAATGGTCGTAGGCGATGATCCATGGCATGAGTTCTGCAGTGTGGTGTCTAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCACTGATGATACCCAGAGCTGTTTGGAACAGGCAACAGGAGTAATGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCGACAGAAGTATAA 2571 0.4535 MKTPFCLGGGHPPTVKGIINREKIKVRHCKGDKGGGSYTGVFMEIDLNHAVTEVEKNAFCDSPCGEQGACASCFSSSTSSSSNSPSHRVSSSYLELWHACAGPLTSLPNKGNVVVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLRICFFPEQANKENDEVYTQVTLLPQAELAGVHLEGQELEKLGAYEDENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNGLPESIIGDQNCYPNFLSTVANAISTRSVFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYRWTKSKWRCLMVRWDEDIATNHQDRISPWEIEPSVSLPPLSIQSSQRLKKLRTGLQAATSSHLMTAGGGAFMDFEESVISPKVLQGQENTGFASYYFGRDAVTNHNQPDFEMSRLGHPNVASTGLSKATATELMRVHPSSYAGFAETNKFMRVLQGQEICPLQSLKGKADFNLGAWSKPNSSCTTFNRHQPSKPNFNTLGSESLQTAYFPFSDVHRAGQSQSSLLCSKPANFQRENLHTPSTQAELSTKEVGRSDLSNKDKIQDSFSAAAAASLGVTNLRIPNDENFEGKVNGCKLFGFSLSGEGNSKNLQSSAAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLIKDPDKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTQEEVEKMTIGMITDDTQSCLEQATGVMEASKSSSVGQPDSSPTEV 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1196 856 Gene3D - 725 819 - -
Lele09g1196 856 SMART B3_2 215 317 IPR003340 GO:0003677
Lele09g1196 856 FunFam Auxin response factor 213 317 - -
Lele09g1196 856 ProSiteProfiles PB1 domain profile. 730 814 IPR000270 GO:0005515
Lele09g1196 856 Pfam B3 DNA binding domain 215 316 IPR003340 GO:0003677
Lele09g1196 856 ProSiteProfiles B3 DNA-binding domain profile. 215 317 IPR003340 GO:0003677
Lele09g1196 856 FunFam Auxin response factor 378 451 - -
Lele09g1196 856 Gene3D - 213 317 IPR015300 -
Lele09g1196 856 CDD B3_DNA 213 315 IPR003340 GO:0003677
Lele09g1196 856 SUPERFAMILY CAD & PB1 domains 731 809 - -
Lele09g1196 856 SUPERFAMILY DNA-binding pseudobarrel domain 207 322 IPR015300 -
Lele09g1196 856 Gene3D - 379 451 - -
Lele09g1196 856 Pfam Auxin response factor 341 423 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele09g1196 856 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 92 819 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele09g1196 856 MobiDBLite consensus disorder prediction 836 856 - -
Lele09g1196 856 FunFam Auxin response factor 725 819 - -
Lele09g1196 856 Pfam AUX/IAA family 723 814 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1196 Lele-ChrLele09 20919363 20924686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1196 90 854 B3 DNA Binding Superfamily AT5G60450 58.801 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele09g1196 AUX_IAA 3.4e-07 CL0072