LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g1184	ATGCAAAAGGTCAACGAAGAGCCGGTGGAAGCTTGGGGGCTGAGCCTGCAACCTGAGAATACATCGACGGCTTACAGTTCTAACCTCCAGATTTTCAATAGGAGTTTTTCTTTTGCTAAGATGGATTGTTGTAATTGTTTCGGGTTCATCCGAAAATCTAAACAGCCGAGTGCTATGTTCGGTATCAATAATAATCTCTCTCAGGAGCTGTTGTCGGATGAAGACATGGAAGATGACGATGGCTCATATGATGGTGAAGTTACTAACATCAGCAGTGGCGATGATAGTGAAGTGCAAATTCGTCCCAACCGGTCTGAAGATATTTTGAAATTGAGAGCAGAGAATGACATGATTTGTAGGCAATTTCCTGTTAAGGAAACTCACAAAGTTGTTCGCACAGAGGATGAAAACGGAAACAAGATGATAAATGAGTATGTTCGTGAACATAAGATAGGTTCTGGTAGCTATGGGAAAGTGGTTTTATATCAAAGTTCTGTTGATGGTAAGCACTATGCAATCAAGGTCTTTCACAAATCTCATTTACTGAAGGTTCGAGTTGCACACTCAGAGACTGCCATGACAGATGTTCTGCGTGAGGTACTCATCATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATCACTTTTACATGGGACTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGACCTCTTTGTGGCTTAGGTGAAGAGACTACTAGGAGATACTTGCGTGACATTGTTTCAGGATTAATGTATCTACATGCTCATAATATTGTGCATGGGGATATTAAACCTGATAATCTGTTGGTTACTCGCCATGGTATGGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGATAATGATGAACTTCATCGGTCCCCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTGGGTGTTCCCTATCATGGTAAAGCTGCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATACTGGGTGAATATCCATTTCTTGGTGATACTCTTCCAGATACTTACGATAAAATAGTCAATAACCCTTTAGTCCTACCAGATAATTTGAACCCGCAATTGAAGAACTTGCTAGTAGGGCTACTTTGCAAAGATCCAAAACTAAGGTTGACGTTAAGTGATGTTGCAAAGCATAGCTGGGTTATAGAAGACGATGGGCCAATTCCTGAGTACTTGTGTTTCTGCAAACGCAAGAACTTGAAGAGGGAAGACTTAGATAGGAGCAATATACTCGCTTGA	1314	0.417	MQKVNEEPVEAWGLSLQPENTSTAYSSNLQIFNRSFSFAKMDCCNCFGFIRKSKQPSAMFGINNNLSQELLSDEDMEDDDGSYDGEVTNISSGDDSEVQIRPNRSEDILKLRAENDMICRQFPVKETHKVVRTEDENGNKMINEYVREHKIGSGSYGKVVLYQSSVDGKHYAIKVFHKSHLLKVRVAHSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMGLEYVEGKWVCEGTGPLCGLGEETTRRYLRDIVSGLMYLHAHNIVHGDIKPDNLLVTRHGMVKIGDFSVSQAFEDDNDELHRSPGTPVFTAPECCLGVPYHGKAADTWAVGVTLYCMILGEYPFLGDTLPDTYDKIVNNPLVLPDNLNPQLKNLLVGLLCKDPKLRLTLSDVAKHSWVIEDDGPIPEYLCFCKRKNLKREDLDRSNILA	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g1184	437	ProSitePatterns	Protein kinases ATP-binding region signature.	151	174	IPR017441	GO:0005524
	Lele09g1184	437	Pfam	Protein kinase domain	145	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1184	437	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	102	408	-	-
	Lele09g1184	437	SMART	serkin_6	145	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1184	437	CDD	STKc_LKB1_CaMKK	151	406	-	-
	Lele09g1184	437	FunFam	Serine/threonine-protein kinase GRIK2	135	435	-	-
	Lele09g1184	437	ProSiteProfiles	Protein kinase domain profile.	145	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1184	437	SUPERFAMILY	Protein kinase-like (PK-like)	141	417	IPR011009	-
	Lele09g1184	437	FunFam	Serine/threonine-protein kinase Ssp1	139	241	-	-
	Lele09g1184	437	Gene3D	Transferase(Phosphotransferase) domain 1	241	415	-	-
	Lele09g1184	437	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	272	284	IPR008271	GO:0004672\|GO:0006468
	Lele09g1184	437	Gene3D	Phosphorylase Kinase; domain 1	139	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g1184	Lele-ChrLele09	20858454	20863067	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g1184	140	413	CBL-interacting serine-threonine protein kinases	AT5G35410	32.117	1.61e-42	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Lele09g1184		Pkinase	5.6e-56	CL0016