Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1182 ATGAGTTCTGAGGAAAAGGCTGTGAGTGAAGGACATCACGCTGCGTCGTGCCTAAGAACGGTTTCTCTTTCAGTGCCTAAGGTTGATGATCCAATGGGAATGTATGAGGAATCAACTCGTGTCCGTCACTGGAAGCGACAAAATCTTCTTCTAGAAATACCCCCAAGAACATCAGAGGAGCATTCTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTATGACTTCACGCTCTGTTGATGCGCCGGTTCATAATTCTCCTGGGCCTTCCGCATCAAGAGGCAAATCATCCATTAAAAATATCTTACCAAAGTTTAACTTCAAGCATAAGACATCATCAGATATGGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCTTCAGTCCATCGAGAAAAGCTTTCAATTGCGAGTTCATTGTCCCTTACTAAGATATTTACACCTAGAATTAAGAGAACGTCATCTTTACCAATAAATGAAATTCATTCAAACTCAGAATCTGTTCATGCTGAAAGTGTCGGCGGATCTCTATATAGTACGAAGGAGCAGGGGCAGATAGCCCGCTCTCAGTCGGTGCCTGTCACTGGTCTAGATAAGGGCATAAGGATAATGGATTCGTTTTACCGTGTTATTCCTTCCACTCCTCATGTAAAGGGAAAAAAAGAATTGTTGACCACATCCCCATCCAAGGATGCTGAAAACAACGATGAAGATGATGATGAAGGTGAAGATATAGCTGAAGAAGACGCGGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGCGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGCGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGACGTGTGCAAGGAGGAGGTGCGGAACCTACCTGTCACACTCTTAAGGATCCAAAATGTTATAAATCAGAATATGGCTAATAGGTCTCAGCTGGCAGATGCGAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTGCTTGTAATTGTGAGCATGCTGGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTAATGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGCATAGTAGGTTCATCTGGTTTTATGCATCCGCCCAATTTGCTCTCATGGTTCTTTTCGCACATATATTTTACTCACTGGTTCATATGCAGGCAGTTTTGGCGATCCTTCTTGCAACATTTGCAGGGTTTGGTATAGTGATGAGCGGGAGCTCTGTTCTCGTTGAGATTGTTCGATGGAGAAGAAGATGGCTGGCAGCATCAGAGCAGCATCATGCTCCTCATGGTGCAATGCAAGCACATTCAGGCCCTCCCGGCAACGGCGGTCAAACAGCGGCGCTCAGTCAACAAAACTCGGTTTAG 1503 0.4451 MSSEEKAVSEGHHAASCLRTVSLSVPKVDDPMGMYEESTRVRHWKRQNLLLEIPPRTSEEHSQDFVGIKMPMTPSPTPTPKRVNFLMTSRSVDAPVHNSPGPSASRGKSSIKNILPKFNFKHKTSSDMEKAFTAAPESSSVHREKLSIASSLSLTKIFTPRIKRTSSLPINEIHSNSESVHAESVGGSLYSTKEQGQIARSQSVPVTGLDKGIRIMDSFYRVIPSTPHVKGKKELLTTSPSKDAENNDEDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVINQNMANRSQLADASAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGNGAIAISLPFSCVLGLLSSMTSSTMVHSRFIWFYASAQFALMVLFAHIFYSLVHMQAVLAILLATFAGFGIVMSGSSVLVEIVRWRRRWLAASEQHHAPHGAMQAHSGPPGNGGQTAALSQQNSV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1182 500 SUPERFAMILY RING/U-box 260 315 - -
Lele09g1182 500 MobiDBLite consensus disorder prediction 484 500 - -
Lele09g1182 500 MobiDBLite consensus disorder prediction 475 500 - -
Lele09g1182 500 SMART ringv_2 263 312 IPR011016 GO:0008270
Lele09g1182 500 MobiDBLite consensus disorder prediction 231 255 - -
Lele09g1182 500 CDD RING_CH-C4HC3_MARCH 264 312 - -
Lele09g1182 500 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
Lele09g1182 500 PANTHER OS02G0165000 PROTEIN 30 474 - -
Lele09g1182 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Lele09g1182 500 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1182 Lele-ChrLele09 20834156 20837808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1182 250 318 C3H Transcription Factor Family AT2G37950 45.714 2.02e-13 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1182 09 20834156 20837808 Lele11g1183 11 19018088 19021732 hybridization
Lele09g1182 09 20834156 20837808 Lele12g0141 12 1088810 1096356 hybridization