Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1176 ATGCAAAATAAAAATTCATTAATAAATCGTCCCATTTTCCTACACACTGTCTCCTTCTCTCCTCCCTTAAATACCCCTTCTTCACCATTCATCCTTCAATCAAGCGAACGAACACGCACAACCAGCGCTGGCCTAGTGTACGTAGTTCAAACAACAATGGGGAAAGACATTGAAGTTGCGGAGCAAAGAGAGATGACGGCGAAAGACTACCAGGACCCGCCTCCGGAGCCGTTGATTGACCCGGAGGAGCTAACCAAGTGGTCATTGTACAGAGCCGTCATAGCGGAGTTCGTGGCAACCCTTCTCTTCCTATACATAACTGTGCTGACCATTATCGGATACAGCCAACAAACTTCCGGCACCACCCCTGACGCCCAGTGCGGAGGAGTCGGCGTCCTTGGTATCGCCTGGGCCTTCGGTGGCATGATCTTCATTCTCGTTTACTGCACCGCCGGTATCTCTGGAGGGCATATTAACCCGGCGGTGACATTCGGGCTGTTCCTCGGAAGAAAGGTGTCGCTGATAAGGGCGGTGTTGTATATCTTAGCACAAATGGCCGGAGCTATCTGCGGGACTGGACTGGCCAAGGCCTTCCAGAAATCTTACTACAACAGGTATGGAGGCGGAGCCAACTTCGTACACGATGGTTACAGCACGGGCACGGCTTTGGGTGCTGAGATAATCGGAACCTTCGTTCTCGTCTACACTGTCTTCTCTGCAACTGATCCCAAGAGGAACGCCAGAGATTCCCACGTTCCTGTTTTGGCACCACTTCCCATTGGGTTCGCCGTGTTCATGGTTCACTTGGCTACCATCCCGGTTACCGGTACTGGAATCAACCCTGCAAGAAGTTTCGGCGCTGCTGTTATCTACAACGATGGCAAGATCTGGGATGATCATTGGATATTCTGGGTTGGACCAATAATTGGAGCTGCGGCGGCTGCAATCTACCACCAACACATTCTGAGAGCTACGGCCATAAAAGCTCTTGGCTCTTTCAGGAGCAACGCTTAA 1014 0.5138 MQNKNSLINRPIFLHTVSFSPPLNTPSSPFILQSSERTRTTSAGLVYVVQTTMGKDIEVAEQREMTAKDYQDPPPEPLIDPEELTKWSLYRAVIAEFVATLLFLYITVLTIIGYSQQTSGTTPDAQCGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYILAQMAGAICGTGLAKAFQKSYYNRYGGGANFVHDGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNDGKIWDDHWIFWVGPIIGAAAAAIYHQHILRATAIKALGSFRSNA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1176 337 Pfam Major intrinsic protein 83 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 225 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 176 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 139 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 261 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PRINTS Major intrinsic protein family signature 301 321 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 61 326 IPR034294 -
Lele09g1176 337 TIGRFAM MIP: MIP family channel proteins 95 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 ProSitePatterns MIP family signature. 157 165 IPR022357 -
Lele09g1176 337 FunFam Probable aquaporin PIP1-2 76 337 - -
Lele09g1176 337 CDD MIP 91 321 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele09g1176 337 Gene3D Glycerol uptake facilitator protein. 76 337 IPR023271 -
Lele09g1176 337 SUPERFAMILY Aquaporin-like 82 323 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1176 Lele-ChrLele09 20810275 20811564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1176 10 337 Major Intrinsic Protein MIP AT2G37170 71.212 2.90e-166 464