Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1174 ATGTTGAAGAGCTCTTTCCAATCTGCGACAATGCCGCCGAAGTTCGACCCCTCACAAGTTGTCGACGTCTTTGTCCGAGTCACTGGCGGTGAGGTCGGTGCCGCGAGTTCACTCGCTCCCAAGATCGGTCCACTCGGGTTGTCCCCCAAAAAGATCGGAGAAGATATTGCCAAAGAGACTGCCAAGGACTGGAAGGGATTGAGGGTCACCGTTAAGCTTACTGTCCAAAACCGTCAGGCGAAGGTTTCGGTGGTGCCCTCTGCGGCTGCTTTAGTTATCAAGGCCTTGAAAGAACCCGAACGAGACCGCAAGAAGACCAAGAACATCAAGCACAATGGTAATATATCCCTCGACGATGTGATCGAGATCGCCCGAACTATGAGGCCCAGGTCGATGGCCAAGGACCTCAGCGGGACCGTGAAGGAGATCCTGGGCACATGCGTCTCCGTTGGCTGCACGGTGGACGGGAAAGACCCGAAGGATTTGCAGCAGGAGATCACTGATGGGGATGTTGAAGTCCCTCTGGACTGA 531 0.548 MLKSSFQSATMPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARTMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1174 176 PANTHER 60S RIBOSOMAL PROTEIN L12 11 161 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 MobiDBLite consensus disorder prediction 157 176 - -
Lele09g1174 176 Pfam Ribosomal protein L11, RNA binding domain 85 154 IPR020783 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 Gene3D - 5 91 IPR036796 -
Lele09g1174 176 SMART rl11c 23 155 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 FunFam 60S ribosomal protein L12 92 174 - -
Lele09g1174 176 Gene3D - 92 174 IPR036769 -
Lele09g1174 176 CDD Ribosomal_L11 23 154 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 ProSitePatterns Ribosomal protein L11 signature. 141 156 IPR020785 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 FunFam 60S ribosomal protein L12 11 91 - -
Lele09g1174 176 SUPERFAMILY Ribosomal protein L11, C-terminal domain 86 159 IPR036769 -
Lele09g1174 176 Pfam Ribosomal protein L11, N-terminal domain 25 79 IPR020784 -
Lele09g1174 176 Hamap 50S ribosomal protein L11 [rplK]. 19 156 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele09g1174 176 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 8 97 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1174 Lele-ChrLele09 20804120 20805417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1174 11 174 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.634 6.46e-108 303