Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1172 ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAAAGGAGCTGCTTCAACCTCCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCATGCGCCGAGGTTCAAGGCCACTGTTAACTTTAACGGCGAGATCTTCGAGAGCCATCATTACTGCTCCACCCTCCGGCAAGCCGAGCACTCTGCCGCTGAGGTTGCTCTCAGTTCCCTCTCCAGTCGTGCCCCGTCACACTCCCTTGCTGCTAGGATTTTGGATGAGACAGGAGTCTACAAGAATCTCTTGCAGGAAATTGCACAGAGGGTTGGGGCTCCATTGCCTCAATATACAACATTTAGGTCAGGATTAGGACATTTCCCTGTTTTTGCTGGTACTGTAGAACTTGCAGGAATAAAATTTACAGGTGAACCTGCCAATAATAAGAAACAAGCAGAGAAAAATGCAGCAATGGCGGCTTGGTCATCTCTAAAACAGTTGGCTAGAGAAACTGCAAGCTCCTCTTCTGAACCTGAGAATAGTGATGAACTAGAACAGATCACAATAGCAAGGGCCTTGCTAAACTACCGTTTGTCAAATCCTAATTCTCCAATTACATTTCCAAGGAAGTTTCAGATTCAAAATCCCAGGCCAACCAAAGCCCAACCTCCACCGGCTACTACATCGAAGATTCTTCCTTTGATTTGCCTGAAGACAGCACATCGAAACAGGCATGGGTTTACAATGATGAATGGAAATCCTAAAAGCAGGCCTCCACTTGCAGCAGCAGCAGCCAATGACGATTCCATGGCACCACCACAGTTATCCACATCAGAAAACCGAGGTTCCCGACCCTTGAAGTTCCCTGCGGTGGGTGCAGCACCTTATGTTCCCATACGACAGATGAGATCACCTTGCCAGGGTATTGCACCTCCGGTGTCTATAAGGACCGTAATCCCTGTATTTGCTGCACCGCCACTTCCTCCACCAGCCACACGGTACCATCAAGGGATGCAGCCCCTTCGCGAACAAGCTGCACCTACCGTCAATATTAGGCAGGCTGTTCCAGTATATGCTGCTCCACCAGTTCCAAAAGATGGACATGGCGCCATCCAGAAGAAAGATTTACAAACTCCAGTTGAAATTGGAGAGAAAGATAGAGAGCCAGAATATGAGACGGTGCAGACCTTGAAGCAGTTGACAATCTGA 1176 0.4864 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESHHYCSTLRQAEHSAAEVALSSLSSRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHFPVFAGTVELAGIKFTGEPANNKKQAEKNAAMAAWSSLKQLARETASSSSEPENSDELEQITIARALLNYRLSNPNSPITFPRKFQIQNPRPTKAQPPPATTSKILPLICLKTAHRNRHGFTMMNGNPKSRPPLAAAAANDDSMAPPQLSTSENRGSRPLKFPAVGAAPYVPIRQMRSPCQGIAPPVSIRTVIPVFAAPPLPPPATRYHQGMQPLREQAAPTVNIRQAVPVYAAPPVPKDGHGAIQKKDLQTPVEIGEKDREPEYETVQTLKQLTI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1172 391 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Lele09g1172 391 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Lele09g1172 391 SMART DRBM_3 88 154 IPR014720 -
Lele09g1172 391 SMART DRBM_3 2 69 IPR014720 -
Lele09g1172 391 MobiDBLite consensus disorder prediction 237 276 - -
Lele09g1172 391 Gene3D - 2 83 - -
Lele09g1172 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Lele09g1172 391 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Lele09g1172 391 Gene3D - 84 155 - -
Lele09g1172 391 PANTHER - 1 351 - -
Lele09g1172 391 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Lele09g1172 391 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Lele09g1172 391 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Lele09g1172 391 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Lele09g1172 391 MobiDBLite consensus disorder prediction 196 216 - -
Lele09g1172 391 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Lele09g1172 391 FunFam Double-stranded RNA-binding protein 2 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1172 Lele-ChrLele09 20795677 20798433 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1172 09 20795677 20798433 Lele29g0238 29 1377173 1378879 CCT
Lele09g1172 09 20795677 20798433 Lele30g1170 30 14611917 14613701 CCT
Lele09g1172 09 20795677 20798433 Lele31g1311 31 19184351 19186058 CCT
Lele09g1172 09 20795677 20798433 Lele32g0225 32 1346909 1348711 CCT
Lele09g1172 09 20795677 20798433 Lele11g1175 11 18973394 18975866 hybridization
Lele09g1172 09 20795677 20798433 Lele12g0149 12 1136587 1137601 hybridization