LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g1164	ATGGGATTGCCGTTTAGCTTGAATATAAGCGTTTACTGCTTTGCCTTAAATGTAGATGCCAAAGAGAGTGCGTCCTTATGGACATGCTTGTGTGATCCCAATGGGTTTCCTAATGTGGAAGCAGATGGCCATAGTTCGAATTGCTTTACTGTCTGCAACTGCACCTGGGGAGCTCTCACCATCTCACAAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTATAATTATACTATTACTATGTGTTATATGCACAACTGGTGCATTTCTTGCCTCAATCCTATGCTATACGGCCTCTTTCTTGTGTGGGAGCAAAGGAGAAACTTTTCACGGAAATATTATTCGATTTTCATTTGCGGTACTAGAAAACGCCACTGTAAATTTTTCAGCTTCCAACCTGATTGGACTAGGCAGAAGTAGTTATGTATATCGTGGTCGACTGAAGAGTGGTACTAATGTGTCTGTGAAGCGACTAAAAGCTCAAGGGCGGACTGAAGCAGACTCTGAGTTTTTTGACAGAGAATCAAAAGGAAAATATGTTGAGAGGTTACTTGTATTTAAGTACATGGCTAATGGTAATTTGAGGGACTGTTTGGATGGAGTTTCTGGAAAAAGTCTGGATTGGGCTACCCGTGTTACGGTTGCAATAGGAGCTGGAAGGGGATTGAAATACCTACATGAAGCGGCTGCTCCAAGAATTCTGCATAGAGATGTTAAATCACCAAACATTCTTCTGGATGAAAATTATCAAGCAAAAATTACCGATCTTGGTATGGCTAAAAACTTAAGAGCTGATGGCTTCCCCAGTTGTTCAAATTCTCCAGTTAGAATGCAGGGCACATTTGGTTATTTTGCACCTGAGTATGCATTTGTTGGAAGAGCCTCTCTTAAGTCAGACATCTTCAGTTTTGGGGTAGTTCTTCTTGAGATTATCGGTGGTCGTCAACCTGTCTATAAATCTAAAGGCAAAGAAGAAAGCCTTGTCATATGGGCTGCTCCTCTCTTACAAGATGAAAGACGCATAATAACCGAGTTAGCCGACCCACAATTAAAAGGAAACGTCCCTGGAGAAGAGATGCAGATAATGGCATATTTAGCAAAGGAGTGTTTGCTGTTGGATCCTGACACTCGACCAACCATGAGTGAAGTCGTTCAAATTCTTTCAACTATATCGCCGGACAAATCTAAATGGACAAGAAACATTCCAGTGAACCTTTTCCAGGAACCAAAGAATTCAGAGAACCTAAAGCAAGTTCCATCTAGTAGAGTAGGTGATGACCACAATCCTTGGGTTGGAAACTTCAATAATGAAGCAGATATAGTTTCTGTTGGATCAGAGGAAGAAATTGTGGACCTAACTGAGCCTCGGTGTGTGATGGATCGACCTCCACCACCTCCGGCGGCAGCACCCCTCCTGGGTCCGGCAACCTTTGACGGAGGATTCTTGGATTCATGAACTAGGGCTGTGAATACTGCTTCTGGATCTGCTTACGCTGAGTTTGGGAATACTAAGGTCATTGCTTCTGTATTTGGGCCAAGAGAGAGTAAGAAGGCAATGACGTATAGCAATATAGGGCGTCTAAATTGCAATGTCAGCTATACAAATTTTGCAACTCTAGATCATGAACAGGGATCAAACCACCAAGAATATTCCGTGATGCTTTATAAAGCTTTGGAGGTTGCAATAATTTTGGAAACTTTCCCCAAGACAACTGTGGATGTTTTTGCATTAGTGCTGGAATCTGGTGGCAGTGCCAAACTGACAATAAGTTTATACCCTGTTTCTAGCAGTGATAATATTAATGTGCTTGTGGCAGGTGATCTCCCAGTTGTCATTTCATGTGCTAGCCTTGCTCTGGCAGATGCTGGAATAATGATGTATGATCTTGTTTCCTCAGTTTCAGTGGGAATGCAGCTTTGCCTGGATGCATGTGCTGAACTTGCGAAGATTATGAGGTCATGTTTGCGAGATGCCGCTTCAGCTTCACAAGAGAGCTTTTACTGA	2004	0.4242	MGLPFSLNISVYCFALNVDAKESASLWTCLCDPNGFPNVEADGHSSNCFTVCNCTWGALTISQGSKKHISSKIVIIILLLCVICTTGAFLASILCYTASFLCGSKGETFHGNIIRFSFAVLENATVNFSASNLIGLGRSSYVYRGRLKSGTNVSVKRLKAQGRTEADSEFFDRESKGKYVERLLVFKYMANGNLRDCLDGVSGKSLDWATRVTVAIGAGRGLKYLHEAAAPRILHRDVKSPNILLDENYQAKITDLGMAKNLRADGFPSCSNSPVRMQGTFGYFAPEYAFVGRASLKSDIFSFGVVLLEIIGGRQPVYKSKGKEESLVIWAAPLLQDERRIITELADPQLKGNVPGEEMQIMAYLAKECLLLDPDTRPTMSEVVQILSTISPDKSKWTRNIPVNLFQEPKNSENLKQVPSSRVGDDHNPWVGNFNNEADIVSVGSEEEIVDLTEPRCVMDRPPPPPAAAPLLGPATFDGGFLDSXTRAVNTASGSAYAEFGNTKVIASVFGPRESKKAMTYSNIGRLNCNVSYTNFATLDHEQGSNHQEYSVMLYKALEVAIILETFPKTTVDVFALVLESGGSAKLTISLYPVSSSDNINVLVAGDLPVVISCASLALADAGIMMYDLVSSVSVGMQLCLDACAELAKIMRSCLRDAASASQESFY	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g1164	667	Gene3D	Transferase(Phosphotransferase) domain 1	189	405	-	-
	Lele09g1164	667	Gene3D	-	482	661	IPR027408	-
	Lele09g1164	667	PANTHER	OS01G0750732 PROTEIN	41	406	-	-
	Lele09g1164	667	FunFam	receptor-like serine/threonine-protein kinase NCRK	189	399	-	-
	Lele09g1164	667	Pfam	3' exoribonuclease family, domain 1	486	624	IPR001247	-
	Lele09g1164	667	Gene3D	Phosphorylase Kinase; domain 1	103	183	-	-
	Lele09g1164	667	Pfam	Protein kinase domain	181	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1164	667	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	233	245	IPR008271	GO:0004672\|GO:0006468
	Lele09g1164	667	SUPERFAMILY	Protein kinase-like (PK-like)	109	387	IPR011009	-
	Lele09g1164	667	SMART	serkin_6	128	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1164	667	ProSiteProfiles	Protein kinase domain profile.	128	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1164	667	SUPERFAMILY	Ribosomal protein S5 domain 2-like	487	624	IPR020568	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g1164	Lele-ChrLele09	20720865	20728736	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g1164	27	456	Receptor kinase-like Gene Family	AT2G28250	48.617	4.15e-148	440

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Lele09g1164		Pkinase	2.6e-28	CL0016