Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1145 ATGGATATTTATCACCTTAGTCGAGAAATTGAAGCTTCTGACATGTCTGCATTGGAGGCTGTCGTAAGCTGTGATGAAGAAAGGTTGCAATTAGAGAAAGAAGCTGAAATTTTAGCAGCACAGGATGATGGAGGTGGCGAAAGTCTTGAACGTGTTTATGAACGATTGGAAGCTCTGGATGCGTCTACTGCAGAAAAGCGTGCTGCTGAAATTTTATATGGCCTGGGTTTTAACAAGCAGATGCAAGCTAAGAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTGGCACGTGCTCTATTTATGAACCCAACCATTCTTTTACTTGATGAACCAACTAATCATCTAGATCTTGAAGCATGTGTATGGCTGGAGGAAAATTTGAAAAAGTTTGACCGCATTCTGGTTGTTGTTTCACATTCTCAAGATTTTCTCAATGGTGTTTGCACAAACATCATCCACATGCAAAATAGAAAGCTAAAGCTTTACACTGGTAACTATGATCAATATGTTCAGACGCGTGCTGAATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAACAGGAGCAGATTGCTTCAATGAAGGAATATATTGCTCGATTTGGGCATGGATCTGCTAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACTGAGAAGGTTGTCATAGACAAAGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAGCTTCCACCACCTGTGCTTCAGTTTGTTGAGGTGACTTTTGGTTACACCCCAGATAATCTCATCTACAAAAACCTTGACTTTGGGGTCGACTTAGATTCTAGGGTTGCACTTGTTGGACCCAATGGAGCTGGGAAGAGTACGCTGCTTAAGCTAATGACTGGGGATCTGGTTCCTAGTGATGGCATGGTTCGCCGGCATAACCATCTTCGTATAGCACAATTTCATCAGCACTTGGCTGAAAAGCTAGACATGGAAATGTCTGCCCTTCAATATATGATAAAAGAGTACCCTGGAAACGAGGAAGAGAAAATGAGGGCGGCTATTGGGAAGTTTGGACTGTCAGGGAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCACATGCTGCTTCTGGATGAACCAACTAACCATTTGGATATTGAGACAATTGACTCTTTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCACGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCAGATCAAGCTGTGACCAGATGGGAGGGCGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCTGGTTTATCTGACTGA 1416 0.4386 MDIYHLSREIEASDMSALEAVVSCDEERLQLEKEAEILAAQDDGGGESLERVYERLEALDASTAEKRAAEILYGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNRKLKLYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVIDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPSDGMVRRHNHLRIAQFHQHLAEKLDMEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLRAKAGLSD 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1145 471 Coils Coil 163 183 - -
Lele09g1145 471 CDD ABCF_EF-3 89 162 - -
Lele09g1145 471 FunFam ATP-binding cassette sub-family F member 3 216 470 - -
Lele09g1145 471 Pfam ABC transporter 9 117 IPR003439 GO:0005524
Lele09g1145 471 ProSitePatterns ABC transporters family signature. 89 103 IPR017871 GO:0005524|GO:0016887
Lele09g1145 471 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 466 - -
Lele09g1145 471 Pfam ABC transporter 156 228 IPR032781 -
Lele09g1145 471 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 471 IPR003439 GO:0005524
Lele09g1145 471 CDD ABCF_EF-3 256 447 - -
Lele09g1145 471 SMART AAA_5 281 469 IPR003593 -
Lele09g1145 471 FunFam Abc transporter f family member 1 1 209 - -
Lele09g1145 471 Pfam ABC transporter 272 403 IPR003439 GO:0005524
Lele09g1145 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 450 IPR027417 -
Lele09g1145 471 Gene3D - 2 209 IPR027417 -
Lele09g1145 471 Gene3D - 243 469 IPR027417 -
Lele09g1145 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1145 Lele-ChrLele09 20565693 20567824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1145 76 143 Calmodulin-binding Proteins AT2G36910 41.429 4.22e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1145 09 20565693 20567824 Lele30g1134 30 14325164 14325475 CCT
Lele09g1145 09 20565693 20567824 Lele31g1271 31 18885419 18885730 CCT
Lele09g1145 09 20565693 20567824 Lele32g0262 32 1631312 1631623 CCT
Lele29g0272 29 1610927 1616641 Lele09g1145 09 20565693 20567824 CCT
Lele30g1142 30 14370301 14376052 Lele09g1145 09 20565693 20567824 CCT
Lele09g1145 09 20565693 20567824 Lele11g1148 11 18753950 18758529 hybridization
Lele09g1145 09 20565693 20567824 Lele12g0176 12 1359929 1363476 hybridization