Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1136 ATGTGGCACGTTCCACCTAATGTCGCACCTTACTTTGGTCGGGCCACAATCACACAGCCCATATTGGCAAGGATTCATCACGTGAAAGTGGAACTTGAAGATGTACTGGGTTCCACTAGCGACAGAAAGCCCACTTCATCCGCAATTTTTGCCCCAAGGAAATGGCCTTCGGCCCATCTTAAGCGTCAGACAGACGTCCATGTTGTGACATGAACCCTGTTTTGGTATGAAGAAGGAGATAAGAGGAATAAAATGGGGGTCAATGAAGATTTAAACACGATAAGTGAGACCTTTCACAGGACTCATGCTTCCACGATTCTATGGAAATGGGAACATGTGCTTTTGCTCCCTATACAAATTTGGGCTTTCACGATTCCTCCTGGCTGGCACTTTTGCTCCAAGGAAACAGACCTCGGCCCAGATAATGGTCAGAAAACCATGTTGGAAGACACCCTGCAATATTCGTTCTTTTCACGCTTTTCTGGCAAACTCGGCAACTGGCTCACTCCACTTCCCTTCTATTTCATGCTCTCATTCCGTTCTTGCTTCTCTCCCCCATTCTTTCCCCACGTCAGGTCATTCTTTCGTCTTGAATTTTCTCTCACACCCCCTAAAACCTTCGCCTCCAAGCCCATTCTCTTGCCCACACATAATCTCTGTTGCCACATGTCCTCGCGACGGACTGCCTTCGATGCTCTCATGTCAGGGGCTCGTGCCGCCGCCAAGAAGAAGCCCGAATCATCGTCGCCCCAGAAACGAAGAACCCCGGATTCTAATTCAACCCAAAACCCTAAACTCCTCAAGAGCACGGGAAGTACGGCTCAGTCTTCGGAACCTAGTAAAGATACTAAATGCTCTGACATTAAAGATTCCGAAAAGGTACAAGAGCCGACAAAAGAAGACTTGAGCAATGGTGAGCTGAAGGGGTCAGAGGGTGCACTGGCGGCGAAGAGAATGCGCGTTGTAGGTTCCCAGGAAAAGACTACAGAAATGAAGAAAAAAGTTCCTCTTTTGAAGAAGAAGCCTACAGATTTTGACCCTAGTTCAATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTGTTTCTCGCTTTGGCATTTGATATGATTAATGATGAGACAGGACGCATTGTGATTACAGATATAGTGTGCAATATGCTTAGGACTGTCATGAACATTACACCTGAGGATCTGGTGGCTGTTGTTTATCTTTCCACAAATAAGATTGCTCCGCCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGTGGAAGAACGGAGGCGCAGATAAAAACTCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATTCATTAACTATTAGGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCTACTGACTGTGAACCTCTATATCTAATTCGTCTGCTTCAGTCAAAGTTGCGGATTGGTTATGGTGAACAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACAGAAGGACATTCTGTACCACCTCCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTGTGTATGACAAAATAATTCTGGCATTGCTTAGTGGTGGTGTATGGAAACTTCAAGAGACATGTAACTTCACTCCTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATGCAGAGTTTACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATAATGGATCAGTTGAGGTTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCACCTGTATCATCAGTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGAAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTGGATGTATGCGTATTTGCCTTTGATATCTTGTATCTTAATGGCAAGCCACTACTTCAGGAAACCCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAACGATGTTGAAGAAATACAAAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGACGCTACATATGAACCTTCCAAGCGGTCACTTAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGAGTCTATGGAGCCTTTCTTCTTGCCTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAACGTTCTTCTACTCTTCGTTCTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTAGGCATAGTAGATTCGGATAAGGGCATATCTCTTCGGTTCCCTCGTCTAGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAGCACAATCACCCAAACAACCAGGATGATGAAGAAGATTGA 2922 0.4363 MWHVPPNVAPYFGRATITQPILARIHHVKVELEDVLGSTSDRKPTSSAIFAPRKWPSAHLKRQTDVHVVTXTLFWYEEGDKRNKMGVNEDLNTISETFHRTHASTILWKWEHVLLLPIQIWAFTIPPGWHFCSKETDLGPDNGQKTMLEDTLQYSFFSRFSGKLGNWLTPLPFYFMLSFRSCFSPPFFPHVRSFFRLEFSLTPPKTFASKPILLPTHNLCCHMSSRRTAFDALMSGARAAAKKKPESSSPQKRRTPDSNSTQNPKLLKSTGSTAQSSEPSKDTKCSDIKDSEKVQEPTKEDLSNGELKGSEGALAAKRMRVVGSQEKTTEMKKKVPLLKKKPTDFDPSSISCWDKGEPVPFLFLALAFDMINDETGRIVITDIVCNMLRTVMNITPEDLVAVVYLSTNKIAPPHEGLELGIGDASIIKALAEACGRTEAQIKTQYKEKGDLGLVAKASRSSQSMMRKPDSLTIRKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPLYLIRLLQSKLRIGYGEQTLLAALGQAAVYTEGHSVPPPEIQSPLEEAAKIVKQVYSVLPVYDKIILALLSGGVWKLQETCNFTPGVPVGPMLSKATKGVSEVLNKFQDAEFTCEYKYDGERAQIHYMDNGSVEVYSRNAERNTGKFPDVVAAISRLKKSPVSSVVLDCELVAYDREKKKILPFQVLSTRARKNVSMSDIKVDVCVFAFDILYLNGKPLLQETLKIRREHLYASFEEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSTLRSKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQKHNHPNNQDDEED 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1136 973 MobiDBLite consensus disorder prediction 282 306 - -
Lele09g1136 973 Pfam DNA ligase N terminus 360 535 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele09g1136 973 FunFam DNA ligase 631 756 - -
Lele09g1136 973 Pfam ATP dependent DNA ligase domain 602 806 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele09g1136 973 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 240 971 - -
Lele09g1136 973 SUPERFAMILY Nucleic acid-binding proteins 814 960 IPR012340 -
Lele09g1136 973 Gene3D - 612 810 - -
Lele09g1136 973 ProSitePatterns ATP-dependent DNA ligase signature 2. 780 806 IPR016059 GO:0003909
Lele09g1136 973 MobiDBLite consensus disorder prediction 941 973 - -
Lele09g1136 973 FunFam DNA ligase 337 604 - -
Lele09g1136 973 MobiDBLite consensus disorder prediction 252 281 - -
Lele09g1136 973 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 418 957 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lele09g1136 973 CDD OBF_DNA_ligase_I 814 957 - -
Lele09g1136 973 Gene3D DNA ligase/mRNA capping enzyme 631 756 - -
Lele09g1136 973 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 594 812 - -
Lele09g1136 973 ProSiteProfiles ATP-dependent DNA ligase family profile. 708 844 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele09g1136 973 CDD Adenylation_DNA_ligase_I_Euk 591 809 - -
Lele09g1136 973 MobiDBLite consensus disorder prediction 234 314 - -
Lele09g1136 973 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 626 634 IPR016059 GO:0003909
Lele09g1136 973 Gene3D - 811 972 IPR012340 -
Lele09g1136 973 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 342 593 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele09g1136 973 Gene3D - 338 604 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele09g1136 973 Pfam ATP dependent DNA ligase C terminal region 831 942 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele09g1136 973 FunFam DNA ligase 811 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1136 Lele-ChrLele09 20490333 20502624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1136 221 973 Core DNA Replication Machinery Family AT1G08130 68.455 0.0 1068