Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1135 ATGCTCAAAATGGATGCTCATCAGCAAGACCCTCTGATGCAAAAGAACGACTTCCTGCTTCATGACTTCATCGACGACACCAATTTCGATCAGTTTATCAATTTGCTCCGTGGCGGCGAGAATGAATATTCATTCTGTAACTTTGATTCTGACCTTATCATCAATGGCTGCTTAGCTGATAACAGCCACTTTCTTCCATTACCTGCTGCAAACCCGTTTGAGTCTAGTAATGCTGCTGTAAATGCTTATGATCCAAGCTCTACGCTTAGTTCATTCTCGTGTTTTGATGGAGAAGTGGAGGGAGGAGGAAGAGGAGAAGAAGAGAATGATTCTTCTGCAACAACAATCACCACCACTACTGAAAATACAACGTGTGCTGATAATTCCAAGAAGAAGTCCAACAAAACTGATCGCTCCAAGACTCTGATTTCTGAACGGAGGAGAAGAGGACGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATTGTGGGCGATGCTGTAGCATATGTGCAGGAGATGCAAGAGAAAGCGAAGAAGCTGAAGGCTGAGGTTAAAGGACTTGAAGCATCTCTGCTAGCGTCTGAAAACGATCAAAGATTAGCTAAAATCCCCATGAAGGTTCAAAACCACATCACCTATCCAATCTGCAAGAAGATCATGCAGATGGACATGTTTCAAGTGGAGGAAAGAGGGTTTTATATGAAATTGGTTTGTAATAAAGGAGAAGGAGTGGCTGCTTCCCTGTACAGAGCTCTTGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTGTTAACATTTACACTGAATGTGAAAGGTTGCGAGTCAGAAATAAACCAGCAAAATCTGAAGCTGTGGGTAGCGAGTGCTCTTCTAAACCAAGGCTTCGAATTTATTCCAACTTTCCATGCTTGA 978 0.4274 MLKMDAHQQDPLMQKNDFLLHDFIDDTNFDQFINLLRGGENEYSFCNFDSDLIINGCLADNSHFLPLPAANPFESSNAAVNAYDPSSTLSSFSCFDGEVEGGGRGEEENDSSATTITTTTENTTCADNSKKKSNKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQEMQEKAKKLKAEVKGLEASLLASENDQRLAKIPMKVQNHITYPICKKIMQMDMFQVEERGFYMKLVCNKGEGVAASLYRALESLAGFNVQNSNLATVSDRFLLTFTLNVKGCESEINQQNLKLWVASALLNQGFEFIPTFHA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1135 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Lele09g1135 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 52 315 - -
Lele09g1135 325 Coils Coil 182 209 - -
Lele09g1135 325 Gene3D - 126 202 IPR036638 GO:0046983
Lele09g1135 325 MobiDBLite consensus disorder prediction 128 147 - -
Lele09g1135 325 MobiDBLite consensus disorder prediction 99 147 - -
Lele09g1135 325 SMART finulus 142 191 IPR011598 GO:0046983
Lele09g1135 325 MobiDBLite consensus disorder prediction 108 127 - -
Lele09g1135 325 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 132 202 - -
Lele09g1135 325 Pfam Helix-loop-helix DNA-binding domain 143 186 IPR011598 GO:0046983
Lele09g1135 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1135 Lele-ChrLele09 20486156 20487804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1135 16 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.885 1.88e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele09g1135 HLH 2.7e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0294 29 1739717 1742903 Lele09g1135 09 20486156 20487804 CCT
Lele30g1121 30 14245188 14248647 Lele09g1135 09 20486156 20487804 CCT
Lele09g1135 09 20486156 20487804 Lele11g1137 11 18661328 18662962 hybridization
Lele09g1135 09 20486156 20487804 Lele12g0185 12 1445416 1447070 hybridization