Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1132 ATGGAAGGCCCGGAGGAATTGGAGTTTGTGGGGCCGCAGTCTGATAATCATGCCACCGCCGTCACGCACGTCGCCAAGGGAAAGCGTACCAAGAGGCACCGCCCCTTCTCGCCTTGTGCTGTCGTCGCGGCCATGACGTCTAGCTCATCGAGCGTCTCCGGGGAACATCTCAGCGCCGGTGGGGATTACGGTTCCATTTCGTCCACCACAACCACCACCACTCATAATAATTATGACGAGAGCACTGAGGAAGAGGAAGACATGGCCAACTGTTTAATTCTCTTGGCTCAGAGTGGAGATTCCCATAATCTCAAGCCCCGACCTCAATCTCAAGCCGCCAGAACAGAATTACCAGGAGGCAGCCGGCGATTCGCAGATATGCCCACCGTCACCGCCTCCGGTGCTGCCAAAGTTGGTTTGTTTGTGTATGAGTGCAAAACGTGTAACCGAAGTTTTCGTTCGTTTCAAGCGTTGGGTGGACACAGGGCCAGCCACAAAAAGCCTAAGCTGACGTTAGAGGAGAAGAAACTGCCGCCGCCTCCGAAACTTATCAACAGTTATGAGATTGAAGAAGTTCCGATGAAAAGCAGCCCTCAAATTTCTCTTAAATTAGAAAATAACATGAATGGGGTTGTATCAATTAACAAGGCGAAGATTCATGAGTGTTCAATATGCGGGTCAGAATTCACGTCCGGGCAAGCATTGGGAGGCCACATGAGGAGGCATAGGGCATCCACCACAACCATGGGTGCGGCCCCTCAGGCGAGTTATGACGAAGTCGCCGGCAACACGAGGTCAGTGGTGGATGCGGTGGAAGTGAAGCCAAGAGTTCTAGCGTTAGATCTAAACCTGCCGGCGCCGGAAGAGGAGGATCATCATTATCAGCGGGATTCCAAGTTTGAGTTGACGGCGAAAGAGAAACCATTGGTGCTGTCTGCTGCGTCTTTGGTGGGATGCCATTATTAG 966 0.5228 MEGPEELEFVGPQSDNHATAVTHVAKGKRTKRHRPFSPCAVVAAMTSSSSSVSGEHLSAGGDYGSISSTTTTTTHNNYDESTEEEEDMANCLILLAQSGDSHNLKPRPQSQAARTELPGGSRRFADMPTVTASGAAKVGLFVYECKTCNRSFRSFQALGGHRASHKKPKLTLEEKKLPPPPKLINSYEIEEVPMKSSPQISLKLENNMNGVVSINKAKIHECSICGSEFTSGQALGGHMRRHRASTTTMGAAPQASYDEVAGNTRSVVDAVEVKPRVLALDLNLPAPEEEDHHYQRDSKFELTAKEKPLVLSAASLVGCHY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1132 321 SUPERFAMILY beta-beta-alpha zinc fingers 142 242 IPR036236 -
Lele09g1132 321 Pfam C2H2-type zinc finger 142 168 - -
Lele09g1132 321 Pfam C2H2-type zinc finger 220 244 - -
Lele09g1132 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Lele09g1132 321 MobiDBLite consensus disorder prediction 63 83 - -
Lele09g1132 321 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Lele09g1132 321 Gene3D Classic Zinc Finger 141 242 - -
Lele09g1132 321 PANTHER ZINC FINGER PROTEIN ZAT5 34 307 - -
Lele09g1132 321 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lele09g1132 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 247 IPR013087 -
Lele09g1132 321 SMART c2h2final6 220 242 IPR013087 -
Lele09g1132 321 SMART c2h2final6 143 165 IPR013087 -
Lele09g1132 321 MobiDBLite consensus disorder prediction 102 116 - -
Lele09g1132 321 MobiDBLite consensus disorder prediction 100 125 - -
Lele09g1132 321 MobiDBLite consensus disorder prediction 63 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1132 Lele-ChrLele09 20456410 20457375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1132 22 321 C2H2 Transcription Factor Family AT2G28200 42.357 1.22e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g1132 zf-C2H2_6 2.2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1132 09 20456410 20457375 Lele11g1133 11 18635990 18636955 hybridization
Lele09g1132 09 20456410 20457375 Lele12g0188 12 1469896 1470852 hybridization