Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1130 ATGATTTCAAGGGCCATCACAACAGCGTCTGGTTTCCAAAATCTCTCTCATCAAGGCCTGCACAATATGTTTCCTGCTGCTGATGATGATGATAATAATCTGGTTGAATCAGCTCCTTCTCAATCAAGCTCCCTCACGTTCAATCTCTCTGTCCTCAAAGACAAGCTTACTCATTTGCAGAATCTCGCCGGTATTCTTATCTCCTCGGATCAGATCCTACCGGAATTAACATGTACAACGTTAGCCAGTATGAATTCTATAATCCAGGCGTTCATAGTCACTGCCTCTTCCATGATGCTCACATGCCAAGACATGGTCCTTAATTTCTCTCCACCACCACCGCCACCACCAGGTACCCATCATTGCACTGAGTCCAACTTTGGCAATTATACAACTAGTGTTACGAGTAACATAGCTCAACACAGAGGGCCGCAAGGCATCTTCTCTAATCCTGATGATCAAAGCTTGGAAAGGTTCGGTGGTGAAAGCTATGATAATAATCTCAAGGATGGTGATCCGGGTGTTGGAATTATTAGTGAAACGAAGAGAGAATTGTGTCAAGGAGATGAAACCAATGAAGGAAAGAACGACGAGGACATAATTGAATTGGACGCTGCAGATTTGTTAGCCAAGTACACGCATTACTGTCAAATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCGGCTTTGAGCAACCCGATGAAGAAGATAAGAGACAAAGAATGTTCGATGAGCACTACGTTTACCCCTAAGAAATACTCATGTCCACAAGAAGGATGTAGGTGGAATCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTATAAGAGAAGTCATTGTCCGAAGATGTTCGTGTGCAAGAGGTGCAATTTGAAGCAGTTCTCTGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTAAAATGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGACATGTTGCTTTGTTCGGTGGCCATGCTCCAGCTGTCGGCGGCGGCTTCTCGTATTCTGGGAAATTGCAACTGCATGAGAAGATGGTAGTTCAACAAGATGATGATGCGTTTGATATGATTGATCAAGAAGGTCTTCTTTTCCAAGCTTAA 1203 0.4364 MISRAITTASGFQNLSHQGLHNMFPAADDDDNNLVESAPSQSSSLTFNLSVLKDKLTHLQNLAGILISSDQILPELTCTTLASMNSIIQAFIVTASSMMLTCQDMVLNFSPPPPPPPGTHHCTESNFGNYTTSVTSNIAQHRGPQGIFSNPDDQSLERFGGESYDNNLKDGDPGVGIISETKRELCQGDETNEGKNDEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKKIRDKECSMSTTFTPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMFVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFGGHAPAVGGGFSYSGKLQLHEKMVVQQDDDAFDMIDQEGLLFQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1130 400 SMART c2h2final6 269 302 IPR013087 -
Lele09g1130 400 SMART c2h2final6 214 236 IPR013087 -
Lele09g1130 400 SMART c2h2final6 307 329 IPR013087 -
Lele09g1130 400 SUPERFAMILY beta-beta-alpha zinc fingers 212 239 IPR036236 -
Lele09g1130 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Lele09g1130 400 Gene3D Classic Zinc Finger 205 273 - -
Lele09g1130 400 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 364 IPR044300 GO:0010044|GO:0010447
Lele09g1130 400 Gene3D Classic Zinc Finger 305 355 - -
Lele09g1130 400 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Lele09g1130 400 FunFam Zinc finger protein 574 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1130 Lele-ChrLele09 20443037 20444239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1130 26 364 C2H2 Transcription Factor Family AT5G22890 48.077 2.86e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g1130 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1130 09 20443037 20444239 Lele29g0301 29 1785465 1786334 CCT
Lele09g1130 09 20443037 20444239 Lele30g1114 30 14197189 14198088 CCT
Lele09g1130 09 20443037 20444239 Lele31g1248 31 18747822 18748691 CCT
Lele09g1130 09 20443037 20444239 Lele32g0280 32 1749627 1750532 CCT
Lele09g1130 09 20443037 20444239 Lele11g1131 11 18624400 18625554 hybridization
Lele09g1130 09 20443037 20444239 Lele12g0190 12 1487196 1488347 hybridization