Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1125 ATGACTATTTCCGCACCTTTCGGGATGTGCATGCAACGTGAAGAACTCTCACTTGGAACTTCTGGATCCGTGTTCGTACAAGGTTTACTTAAATTAGCCACAGGTAGCTGTAACTCCTTCCACTGTATAGTCCAATTTCGTAATGCCCTTCTTGATGATGGGGCTGAGATTGATAAAGAAATGGCTATTACTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCAATCACCTAGGAGGCGAGGAGATGGAGGGAGTGGAAGCACCCGATCTTCTTCAATCTTGCATATGTGGCGAGAGATTGAGGATGAGCATGTGGTAGGTCAAGTCCAAGGAAGACCTGGTGATGGATTACTTCAGCAAAGGAGTGACGAGTTCATCGCAGACCTCTCACAGGCAAGTATGCCAAGTAGCGATGAGACAGGAGAGAGGCATGTGCTAGAAGATTCAATTTTGGGTGAGAATGATTGTGAAACATGGTCACAGTCACAAAGTCAGCATGAATCTCCTGATGAGCAGGAGGAATTAAACAATTCTACTTGTGATAATTCTTCTGATCTTGGAGAAGTTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAGAGTGGTGCTGGGGATCCAGCTACAAACATTCCCCAAGGTAATAGCAGTTCAAGATCAGAATGGCTCGGTGAAACTGAGCAGGAGAGAGTGAGAATCATAAGGGAGTGGGTACAATCGAGTAGCCAGCAGAGAGTTATTTCTTTTGGGGACAACAGGGAAGAACAATCAGCTGAATTTGGTACCCAGATAGAAAGAGTTCGTGATGGGTTTGTTGTTAATCAGAGCGAGGGTCAGACTGAGCATATGCGGAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAAGGAAAGACAAAGAGAAGTTCAGGAATTATTGGACCATAGAGCTGTATCTCATTTCCCCTATCGCAACCGCATCCAGGCATTGCTCAGGGGTAGGTTCTTGAGAAATGACAGATCAATTGATGTTAACCGGTCCACTTCCATATCGGAAAGTGAATTAGGCTTACTGAGGCAAAAGCAGACTGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACAATTCTGGTGGCAGTCAAGTAACTTGCACTCCATCAGATACCTCATCTAATAGTGGCATTGATAATAATTCAAATGAACAAGCTGACTCCAGCAGTTTACATTCGGTCTCAATTGTACATTTTGAACAGTCTGAAACTACCATAGGAGGTAGCGATGGAGTTGGGAACTTAGATGGTCAGAATTTTACACTAGAAACCATAATGGAAAATTTAGATTGTCAAGACTCCACTCATATAGAAGGAAGGTCGTCACAGCTTTTGGAAAATAAGTCAAGAGATTGCCAATCATCATCCAGTGTCGGGATGGAAAGAAGAGATGATACCAGGCTATGTGTTGCTGGGATGACAGTTGAAGATACGACCGATAGACTTATGCAACAAAATCATCAGACTGAAGTTACAGAACATAGCAATATGCAGGGTTCTAGTGAGGTATATCCTGAAGAATTTGAGCCAAGTGTTATAAGCAATGATGATAATGGTTCATCAACCCATAGTGATGTTATGGAAGCCACTATGGTAGATAACGAAAATAGGTATGTATCTACTGTTCTGGAAGAGCAACAGCAGGAAGAACTCCTTGAAAATGAAGGAAGTGATGGGCACCTGAGAAATGGCACAGAGGATGGTCCGGATGATAATCATCCGAGTGGTACAGCCAATGAATGGCCTCAAGACATTTTGGGCAATGAAGATGGGGAAAATTCTCGTCTACCCGAAGCCCGTGAAATTTGGCAAGAAGATGGTGGCTTTCAGGAGGCTGTGGAAAATTGGTTGGGTGGACCTTCTGATCATGAAGTTGCTCCAGTTGGTAGAATTCATGGCTTTTACTTTCCAGATGATGACAATGTGAACAGCGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTTTCTAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAACAACTCCTTCTTCTCCATCAGTTGAACGGGACCTGGAGCAGCCACGTAGGGATCAGATTGTTGGTCAGGAGGATACTATCAGTAGTCCACTTGACCAACCCTCATCACCAACACCTCCTCAACCTCTCTGGGAACGACATTCACGTCATGACAATTGGTCACGAGCTGACATGAATAATCAGCGTCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCCCTAAATCGCTCAGAAAACCAATCAGATGTGCATGACCACGATTCACCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGACTATGCTGTATGTGCTGCGAGAGCAACATTGATTCTTTGTTGTACAGATGCGGCCACATGTGCACATGTTCAAAGTGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCGCCTGTTGTGGAGGTGATACGCGCTTATTCTATACAATAA 2763 0.4397 MTISAPFGMCMQREELSLGTSGSVFVQGLLKLATGSCNSFHCIVQFRNALLDDGAEIDKEMAITGLHNLSVLDSSFLRDSHSQSPRRRGDGGSGSTRSSSILHMWREIEDEHVVGQVQGRPGDGLLQQRSDEFIADLSQASMPSSDETGERHVLEDSILGENDCETWSQSQSQHESPDEQEELNNSTCDNSSDLGEVERERVRQIFREWMKSGAGDPATNIPQGNSSSRSEWLGETEQERVRIIREWVQSSSQQRVISFGDNREEQSAEFGTQIERVRDGFVVNQSEGQTEHMRRGIRKLCGRQVLLDMLKKAEKERQREVQELLDHRAVSHFPYRNRIQALLRGRFLRNDRSIDVNRSTSISESELGLLRQKQTVSGLREGFFSGKDNSGGSQVTCTPSDTSSNSGIDNNSNEQADSSSLHSVSIVHFEQSETTIGGSDGVGNLDGQNFTLETIMENLDCQDSTHIEGRSSQLLENKSRDCQSSSSVGMERRDDTRLCVAGMTVEDTTDRLMQQNHQTEVTEHSNMQGSSEVYPEEFEPSVISNDDNGSSTHSDVMEATMVDNENRYVSTVLEEQQQEELLENEGSDGHLRNGTEDGPDDNHPSGTANEWPQDILGNEDGENSRLPEAREIWQEDGGFQEAVENWLGGPSDHEVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPSVERDLEQPRRDQIVGQEDTISSPLDQPSSPTPPQPLWERHSRHDNWSRADMNNQRLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSENQSDVHDHDSPDDKSKWECVRKGLCCMCCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIQ 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1125 920 Coils Coil 303 330 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 164 197 - -
Lele09g1125 920 Pfam Zinc finger, C3HC4 type (RING finger) 865 912 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 716 772 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 521 554 - -
Lele09g1125 920 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 842 918 IPR013083 -
Lele09g1125 920 MobiDBLite consensus disorder prediction 576 624 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 209 234 - -
Lele09g1125 920 ProSiteProfiles Zinc finger RING-type profile. 868 907 IPR001841 -
Lele09g1125 920 MobiDBLite consensus disorder prediction 838 857 - -
Lele09g1125 920 SUPERFAMILY RING/U-box 867 913 - -
Lele09g1125 920 CDD mRING-HC-C3HC5_NEU1 868 906 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 387 422 - -
Lele09g1125 920 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 61 920 - -
Lele09g1125 920 Coils Coil 796 823 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 583 599 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 79 98 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 381 422 - -
Lele09g1125 920 MobiDBLite consensus disorder prediction 218 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1125 Lele-ChrLele09 20400650 20408186 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1125 09 20400650 20408186 Lele29g0305 29 1810672 1811445 CCT
Lele09g1125 09 20400650 20408186 Lele30g1110 30 14167077 14167847 CCT
Lele09g1125 09 20400650 20408186 Lele31g1244 31 18716667 18717440 CCT
Lele31g1251 31 18763435 18767060 Lele09g1125 09 20400650 20408186 CCT
Lele30g1115 30 14206287 14208031 Lele09g1125 09 20400650 20408186 CCT
Lele09g1125 09 20400650 20408186 Lele11g1126 11 18581931 18589186 hybridization
Lele09g1125 09 20400650 20408186 Lele12g0199 12 1527527 1532544 hybridization