LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g1115	ATGGCGGAGGACCGCAACGGCGATAAGAATGAAAACAGTGATTACAGTTCAGAGGATGAAGGAACTGAGGATTACAGGCGAGGAGGTTACCATGCGGTTCGAATTGGGGATACTTTCAACAATGGCTGCTATGTGGTGCAGGCCAAGCTTGGTTGGGGTCATTTTTCTACAGTCTGGCTTGGTTGGGACGTCCAGAGATCGCGTTATGTGGCCTTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCCATGGATGAAATAAAGATTCTTAAACAGATTGCAGAAGGGGACCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTCAAGCATTCTGGTCCTAATGGTCAGCATGTATGTATGGTGTTTGAATTTCTGGGTGACAATCTTCTGACACTTATCAAATATAGTGATTACAGAGGGGTTCATCTCCCCATGGTTAAAGAAATTTGCTACCATATTTTGGTGGGCTTGGATTACCTGCATCGAGAGCTTTCCATAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCATCTAAGGATCACAGAAAGTCAGGGCCCCCGCTCATCCTTCCTAGCACCAAGGACAATTTTGTATCCAAGAATGAGGTCTCAAAAGATAATGTAAGCTCGAATGGAAATCTGACCAAAAGCCAAAAAAAGAAAATGCATAGAACGGCAAAGGTTGAGAATGAACTTATTGAGGAGGCTGAGGGTTCTAAAGATCATGATCAAGAAGATTCTAGGAATGATCTAAAATCAAATGCTGGATCTGTTGAAGATAAACCCAGTAGTTCAGTGAGTAAAGATGAACCAACCAAGGTAGTCAAAACTAAGGATGTTCCGCAAGGAAGTCAGAGTCAGAGGAAAAGTAGCCGTTCCATGAGAAAAAAGCTGCTTGCAGCTGTTGATCTAAAGTGCAAACTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAAACAAGGCAGTATAGATGTCCTGAGGTTATTCTTGGATCCAAATACTCAACTCCAGTGGATTTATGGTCTTTTGCTTGCATTTGCTTTGAGCTGGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCACCTGGCATTGATGATGGAACTTCTTGGAATGATGCCTCGCCAGATCGCACTAGGTGGCCGCTATTCCCGGGAATTTTTCAATAGATATGGTGATCTAAGGCACATTCGTCGGTTGCGGTTCTGGCCTCTTAACAAGGTGCTCATGGAGAAGTATAATTTTAGTGAGCAAGATGCAAAAGACATTACAAACTTCCTCGTTCCGTTACTTGATTTTGTCCCCGAAAATAGGCCAACAGCTGCTCAGTGTCTTAGTCATACCTGGTTCAGTGCTGGTCCTCGGATTCTTCAGCCCTCTACAACTACTGTGCAACCTGAAGCCATTGAGGGAGGAATGTCTGAAGAAACAAAGCGGGATATGGCTGAGCAGGAAGCTGTGGAAGTTGGTGTGAGCAATATAGCCATTGATGGAACTCCAAAGCCACTCAAAAAGTTACATTCTGTTAGGTTATAA	1620	0.4284	MAEDRNGDKNENSDYSSEDEGTEDYRRGGYHAVRIGDTFNNGCYVVQAKLGWGHFSTVWLGWDVQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVHLPMVKEICYHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDHRKSGPPLILPSTKDNFVSKNEVSKDNVSSNGNLTKSQKKKMHRTAKVENELIEEAEGSKDHDQEDSRNDLKSNAGSVEDKPSSSVSKDEPTKVVKTKDVPQGSQSQRKSSRSMRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPVDLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRQIALGGRYSREFFNRYGDLRHIRRLRFWPLNKVLMEKYNFSEQDAKDITNFLVPLLDFVPENRPTAAQCLSHTWFSAGPRILQPSTTTVQPEAIEGGMSEETKRDMAEQEAVEVGVSNIAIDGTPKPLKKLHSVRL	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g1115	539	SUPERFAMILY	Protein kinase-like (PK-like)	39	489	IPR011009	-
	Lele09g1115	539	SMART	serkin_6	44	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1115	539	CDD	STKc_SRPK	33	478	-	-
	Lele09g1115	539	FunFam	Serine/threonine-protein kinase SRPK-like protein	308	478	-	-
	Lele09g1115	539	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Lele09g1115	539	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Lele09g1115	539	MobiDBLite	consensus disorder prediction	192	305	-	-
	Lele09g1115	539	Gene3D	Transferase(Phosphotransferase) domain 1	127	479	-	-
	Lele09g1115	539	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Lele09g1115	539	Pfam	Protein kinase domain	315	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1115	539	Pfam	Protein kinase domain	44	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele09g1115	539	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	10	498	-	-
	Lele09g1115	539	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele09g1115	539	MobiDBLite	consensus disorder prediction	206	228	-	-
	Lele09g1115	539	MobiDBLite	consensus disorder prediction	236	267	-	-
	Lele09g1115	539	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Lele09g1115	539	ProSiteProfiles	Protein kinase domain profile.	44	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g1115	Lele-ChrLele09	20299802	20302366	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g1115	1	529	EF-hand Containing Proteins	AT5G22840	66.292	0.0	725

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Lele09g1115		Pkinase	5.1e-20	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g1115	09	20299802	20302366	Lele11g1115	11	18407789	18411068	hybridization
	Lele09g1115	09	20299802	20302366	Lele12g0207	12	1676291	1678724	hybridization