Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1104 ATGGAGTTCTGGGGTGTCGAGGTTAAGGTTGGGGAGTCTGTTAAAGTTGATCCTCAAGAGTTTGATGCCTACATTCATCTTTCTCAGGCTGCTCTTGGTGAGACAAAGAAAGATAAGGGAGCTGAACATGTGGTTCTTTACTTAAAATTCGATGACCAAAAGTTTGTTTTGGGAACCCTTTCGAAGGATAACTTCCCCCAGATATCGTTTGACTTAGTTTTGGAAAAGGAGTTTGAACTCTCCCACAATTCAAAAAATGGGAGCGTCTTTTTCTATAGTGAGGAGGGTGTGGATCTCCCAGCGGATCTCTCAGTGATAGCCAAAGATAATGGAAAAGCTGATGCTAAGACTGCCCTAGCTAAGATTGCAGCATCCAAAAAAAGTGCTGCCAGTGCTAATGATTCCAAAAAGCAAAGCAAGGTTGATCCAAAGAATGATGAAGATGATGAATCTGATGATGAAGATGATTTGGATGGGGGTTCTGATGAGGATATGCTGGATGGGGAAAGTGATAGCGATGACGAGAGTGATGATGATGAAGATGATGAGGAGACTCCCAAGAAGCCGGATCTGAGTAAGAAGAGACCCAATGATTCTGCACTAAAAACTCCAGTTTCTGTCAAGAAAGCTAAAGCTGGTACTCCTGAAAAGAAAGATGCTAAGAAAGGTGGTCATACCGCAACTCCTCACCCAATGAAGAAGGGGGGAAAGACTCCTAACAGTGAAGCCAAGGAGCCTAAGTCTGGTGGACATTTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAAGTGGTCTTCAACAACATAATAAGGCAAAGCACAGTGGCCAGTAA 837 0.4337 MEFWGVEVKVGESVKVDPQEFDAYIHLSQAALGETKKDKGAEHVVLYLKFDDQKFVLGTLSKDNFPQISFDLVLEKEFELSHNSKNGSVFFYSEEGVDLPADLSVIAKDNGKADAKTALAKIAASKKSAASANDSKKQSKVDPKNDEDDESDDEDDLDGGSDEDMLDGESDSDDESDDDEDDEETPKKPDLSKKRPNDSALKTPVSVKKAKAGTPEKKDAKKGGHTATPHPMKKGGKTPNSEAKEPKSGGHLSCKSCSKTFNSESGLQQHNKAKHSGQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1104 278 MobiDBLite consensus disorder prediction 211 226 - -
Lele09g1104 278 MobiDBLite consensus disorder prediction 253 278 - -
Lele09g1104 278 Pfam Nucleoplasmin-like domain 3 83 IPR041232 -
Lele09g1104 278 MobiDBLite consensus disorder prediction 146 185 - -
Lele09g1104 278 Gene3D Nucleoplasmin core domain 1 94 - -
Lele09g1104 278 ProSitePatterns Zinc finger C2H2 type domain signature. 254 275 IPR013087 -
Lele09g1104 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 278 IPR013087 -
Lele09g1104 278 FunFam Histone deacetylase HDT1 1 96 - -
Lele09g1104 278 MobiDBLite consensus disorder prediction 124 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1104 Lele-ChrLele09 20210327 20212735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1104 1 271 C2H2 Transcription Factor Family AT3G44750 41.176 2.22e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele09g1104 NPL 1e-11 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0314 29 1897110 1900429 Lele09g1104 09 20210327 20212735 CCT
Lele30g1094 30 14072131 14075434 Lele09g1104 09 20210327 20212735 CCT
Lele09g1104 09 20210327 20212735 Lele11g1104 11 18312679 18314768 hybridization
Lele09g1104 09 20210327 20212735 Lele12g0215 12 1795490 1798238 hybridization