Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1075 ATGTATAGCAACTTTAAGGAGCAGGCAATAGAGTACGTGAAGCAAGCTGTGCAGGAAGACAACGCTGGTAATTATGCAAAAGCGTTTTCTTTGTATATGAATGCTTTGGAGTACTTCAAGACCCATCTGAAGTACGAGAGAAATCCTAAGATCAAAGAAGCGATTACCCAGAAATTCACCGAGTATCTTCGGCGGGCTGAGGAGATTCGAGCTGTTCTTGATGATGGAGGGCCCGGCCCGGCTTCCAATGGGGATGCTGCGGTAGCTACGCGACCTAAGACCAAACCGAAAGATGGGGAAGGGGATGGGGAGGATCCAGAGCAGTCAAAGCTCAGGGCTGGGCTGAATTCAGCGATCATTCGAGAGAAACCCAATGTGAAGTGGAACGATGTTGCTGGATTGGAGAGCGCCAAGCAAGCTTTGCAGGAGGCGGTTATTTTACCTGTGAAGTTCCCGCAATTTTTCACAGGTAAAAGACGACCCTGGAGAGCCTTCTTGTTGTATGGGCCACCTGGAACTGGGAAATCATATTTGGCCAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTCAGTGTTTCTTCATCAGATCTGGTTTCTAAGTGGATGGGTGAAAGCGAAAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGAAAGTGCTCCTTCCATCATATTTGTTGATGAAATAGATTCTTTATGTGGTCAGCGTGGAGAAGGTAATGAGAGTGAAGCTTCAAGGAGAATCAAAACTGAACTTTTAGTACAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCATATGCTCTTGATCAGGCGATAAGGCGGCGTTTTGATAAGCGAATATACATACCACTACCAGATTTGAAGGCTCGCCAACATATGTTTAAGGTGCATTTGGGTGATACTCCCCATAATTTGAGTGAAAGTGATTTTGAACATTTGGCTCGTAGGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGTCAAGGATGTTTTATTTGAGCCTGTTCGGAAAACCCAAGATGCCATGTTTTTCTTCAAGAGTCCCGAGGGTATGTGGATACCTTGTGGACCAAAGCAACAGGGTGCAGTACAGATCACCATGCAGGATCTTGCTGCAAAAGGACTTGCGTCCAAGATCCTTCCACCACCTATTACAAGAACAGATTTTGACAAGGTGCTGGCAAGACAAAGGCCTACAGTGAGCAAATCTGACCTTGAGGTTCAAGAGAGATTTACTAAAGAGTTTGGAGAAGAAGGTTGA 1299 0.4511 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFSLYMNALEYFKTHLKYERNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGDGEDPEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLSESDFEHLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQITMQDLAAKGLASKILPPPITRTDFDKVLARQRPTVSKSDLEVQERFTKEFGEEG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1075 432 SMART smart 2 79 IPR007330 -
Lele09g1075 432 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Lele09g1075 432 CDD AAA 132 295 - -
Lele09g1075 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 428 IPR027417 -
Lele09g1075 432 Gene3D - 6 75 - -
Lele09g1075 432 SMART AAA_5 161 297 IPR003593 -
Lele09g1075 432 Pfam ATPase family associated with various cellular activities (AAA) 166 295 IPR003959 GO:0005524|GO:0016887
Lele09g1075 432 MobiDBLite consensus disorder prediction 91 109 - -
Lele09g1075 432 FunFam Vacuolar protein sorting-associated protein 4 124 304 - -
Lele09g1075 432 ProSitePatterns AAA-protein family signature. 267 286 IPR003960 GO:0005524|GO:0016887
Lele09g1075 432 SUPERFAMILY MIT domain 2 81 IPR036181 -
Lele09g1075 432 CDD MIT_VPS4 4 77 IPR045253 -
Lele09g1075 432 Pfam Vps4 C terminal oligomerisation domain 365 429 IPR015415 -
Lele09g1075 432 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Lele09g1075 432 Gene3D - 124 420 IPR027417 -
Lele09g1075 432 PANTHER AAA DOMAIN-CONTAINING 16 430 - -
Lele09g1075 432 MobiDBLite consensus disorder prediction 73 110 - -
Lele09g1075 432 Gene3D - 297 412 - -
Lele09g1075 432 FunFam vacuolar protein sorting-associated protein 4A 297 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1075 Lele-ChrLele09 19968317 19971050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1075 160 353 Calmodulin-binding Proteins AT3G56690 37.245 7.36e-36 139