Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1065 ATGCCTATTCCTTCTGAGAGGCATTTGTTCCTTCGAAGTGGAAATGGTTCAGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAACCCAGGTTGAAATGGACACCAGATCTCCATGCCCGATTTATTGAATCAGTCAATCAGCTGGGAGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTCACTTTGTATCATCTTAAGAGCCATCTTCAGTTTAATTGGAAAACTTTCAAATGGTATGAATTTAAGAGATATCAAACATCGAGGACTTCTAAATTTCGTTTTCCTTTCCTACAACAACTTAACTTTTTGCTTACGAAGAACATGTTTATCTTATTCACGCCAGCACCAAATGCAAGTGCCGTTAGTGGAGAAAGACTTTCTGAAGCAAATGGAACTCACAATCATATGAACAATAATCTAACCCTTGGGCCGCAACAGCAGGGTAATAATAACAAAGATTTACATAAAAGCGAGGCGTTGCAGATGCATATTGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTTCAGAGACACTTGCAGCTCCGAATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAGGAGACGCTTGGAAGGCAGAATTTAGGAATAGTAGGTCTTGAAGCTGCCAAAGTTCAACTCTCAGAACTAGTTTCCAAAGTATACTCTCAATGTCTGAGTTCTGCTTTTTCAGATCTGAAGGAATTAAACACATTTAATAGCCCCCAGATCAACAACACAAGAACCAACCAACCCAATGACTGTTCAATGGACAGTAGCCTCACATCCTGCGAGGGATCTCAAAGGGATCAGGAGAATGTTCCAATTGGTGGTGGTATCTGCTTAACGAGAACTTTTAATGGTGGCCACACCTTCATGGAACCAAACAAGGAAGCAGCAGAGGCGAAAAAGAACAATAATAATAATAATTTTCTCAACCCTTTTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACGAGAAATGGAAGCAGCATCTATCCTGAGAGAATAATAATGGGGAGAGAATCAGATAATGATCAGCTCCAGCATCGACGCACCAATAATAGAACAGAAGGGATGAAATTAGCAGGGGACGAAAAAGTTGCAGGAGATTATAGATTGCCGCCGTACTTTTCTACACCAAGATTAGACCTTAACAGCCGCCAAGAAAATACCGATGGCGCAGCGAGTTGTAAACAACTGGACCTGAATGGATTCAGCTGGAACTGA 1278 0.4202 MPIPSERHLFLRSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIESVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQFNWKTFKWYEFKRYQTSRTSKFRFPFLQQLNFLLTKNMFILFTPAPNASAVSGERLSEANGTHNHMNNNLTLGPQQQGNNNKDLHKSEALQMHIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVYSQCLSSAFSDLKELNTFNSPQINNTRTNQPNDCSMDSSLTSCEGSQRDQENVPIGGGICLTRTFNGGHTFMEPNKEAAEAKKNNNNNNFLNPFGNLTMSIGVEGETRNGSSIYPERIIMGRESDNDQLQHRRTNNRTEGMKLAGDEKVAGDYRLPPYFSTPRLDLNSRQENTDGAASCKQLDLNGFSWN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1065 425 Gene3D - 28 85 - -
Lele09g1065 425 MobiDBLite consensus disorder prediction 362 382 - -
Lele09g1065 425 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 29 79 IPR006447 GO:0003677
Lele09g1065 425 Pfam MYB-CC type transfactor, LHEQLE motif 166 210 IPR025756 -
Lele09g1065 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 321 IPR044848 GO:0003700
Lele09g1065 425 SUPERFAMILY Homeodomain-like 28 81 IPR009057 -
Lele09g1065 425 MobiDBLite consensus disorder prediction 257 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1065 Lele-ChrLele09 19859189 19861185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1065 61 425 G2-like Transcription Factor Family AT3G04030 42.933 5.47e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele09g1065 Myb_CC_LHEQLE 5.2e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1065 09 19859189 19861185 Lele11g1068 11 17929547 17941562 hybridization
Lele09g1065 09 19859189 19861185 Lele12g0247 12 2185458 2188782 hybridization