Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele09g1063 | ATGGAGGGTGCTCCGATTGATTTTCTTGAGGTTCTGCTAGTTATGTTATCAATGCCCCTTTTTAGTAAAGTTCTATCACAGTATGACCCTGAAGTCTCATCTCATTGCACGGGTTCTGCTGAATTCATTTCGCTGCAAATGCCACGAGGAAAGGAAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATCTCGATGAAGAAAATGATCCTGAGGAAATGATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAGATCGAAGAGGAGGTGGAAGAAGAGGAGGAAGAGGAAGAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGATGCTGATGATGCTGATCATGCCAATGACCCTGATGCCATGCATAACATTAGCAGTGATGAGGCAAAGGTGGAAGATGAGGATGAAAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCCCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAGGTTTCAGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCGGAAAACAAGGGATTTGGTTTTGTGACCTTCAAAAGTGTAGAATTGGCTTCTAAAGCCATTGAAGAGCTGAATAATAAACAATTTAAGGGTAGAAAGATAAAATGTTCATCATCTCAAGCAAAACACAGACTTTTCATTGGTAATGTTCCTAGAAGCTGGGGAGATGAGGATCTAAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACAATTGTGGAACTAGTCAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATTCAAAATTCAAGCTAGGTAACAATGCTCCTACAGTGAGCTGGGCTGACCCTAAAAATGCTGAGTCATCTGCTACATCTCAGGTGAGGGCAGTATATGTCAAGAACTTACCCAAGGATGTAACTGGAGATGAACTAAAGAAACTTTTTGATCGCCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGGTTGATAAGTCTGGAGGATCAAATACACAGAAGTCAGGATTGCTTCCTGGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGTGCTAGGCGCTGGATATGGTGCTGCAGGTCTTGCACAGCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGTCCATGATGCCCATGCTTTTGCCAGACGGACGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCTGCACAACATAGAGGTGGTGGCAGAAATGGAGGGAGTGGCAGCAGGAACTTCGGCAGTTCAAGCAAGGGATGGCACAACAATTCAAGTGGCCAAGGGCGCAGATATCGTCCATATTAG | 1635 | 0.433 | MEGAPIDFLEVLLVMLSMPLFSKVLSQYDPEVSSHCTGSAEFISLQMPRGKENSSSVAKPSEPEKPTESDEKVDLDEENDPEEMMEEEIEYEEVEEEEEVEEIEEEVEEEEEEEEVEEEEEEEEDADDADHANDPDAMHNISSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVSEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELNNKQFKGRKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTEIGPGVTIVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDSKFKLGNNAPTVSWADPKNAESSATSQVRAVYVKNLPKDVTGDELKKLFDRHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNTQKSGLLPGYPPHVGYNLIGGAYGVLGAGYGAAGLAQPMIHGRGPAPSGMSMMPMLLPDGRIGYVLQQPGMQPQTPPAQHRGGGRNGGSGSRNFGSSSKGWHNNSSGQGRRYRPY | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele09g1063 | 544 | CDD | RRM_SF | 170 | 242 | - | - | |
| Lele09g1063 | 544 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
| Lele09g1063 | 544 | SUPERFAMILY | RNA-binding domain, RBD | 338 | 443 | IPR035979 | GO:0003676 | |
| Lele09g1063 | 544 | Gene3D | - | 330 | 435 | IPR012677 | - | |
| Lele09g1063 | 544 | Gene3D | - | 85 | 248 | IPR012677 | - | |
| Lele09g1063 | 544 | Coils | Coil | 84 | 129 | - | - | |
| Lele09g1063 | 544 | MobiDBLite | consensus disorder prediction | 73 | 131 | - | - | |
| Lele09g1063 | 544 | MobiDBLite | consensus disorder prediction | 495 | 544 | - | - | |
| Lele09g1063 | 544 | MobiDBLite | consensus disorder prediction | 518 | 544 | - | - | |
| Lele09g1063 | 544 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 248 | 330 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | SMART | rrm1_1 | 249 | 326 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | SMART | rrm1_1 | 343 | 416 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | SMART | rrm1_1 | 169 | 242 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | SUPERFAMILY | RNA-binding domain, RBD | 165 | 333 | IPR035979 | GO:0003676 | |
| Lele09g1063 | 544 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 342 | 420 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 250 | 315 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 344 | 413 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 240 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 168 | 246 | IPR000504 | GO:0003723 | |
| Lele09g1063 | 544 | MobiDBLite | consensus disorder prediction | 43 | 139 | - | - | |
| Lele09g1063 | 544 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 249 | 329 | - | - | |
| Lele09g1063 | 544 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 51 | 532 | - | - | |
| Lele09g1063 | 544 | SMART | rrm2_1 | 169 | 242 | IPR003954 | GO:0003676 | |
| Lele09g1063 | 544 | SMART | rrm2_1 | 343 | 416 | IPR003954 | GO:0003676 | |
| Lele09g1063 | 544 | FunFam | RNA recognition motif-containing protein | 67 | 248 | - | - | |
| Lele09g1063 | 544 | Gene3D | - | 249 | 329 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele09g1063 | Lele-ChrLele09 | 19847349 | 19851607 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele09g1063 | 168 | 424 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.778 | 9.21e-20 | 91.3 |