Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1062 ATGATCGAGGTCCTCCATTCCTCATCCCATTTCTCTTGCTCGTCAACGATAACCTCTCCCTCTTCGTCTTGCGCAACCCCTCCCGGCGATGGCATTTTCATTATTTGTGACCAAGAACCTCCATCGCCGTCTTCGCTAGCCGTGGAGGGTTGTTCGCCGGCGACGGACTGTGACGCCGAGGAGCTGGAGGAGAGGGACAAGCGCCGGACGGAACAGCTTTCACTTTTGGCGCTTGTTGTGGCCATTTTCAGGAAATCCTTGCTTGCTTGTAAGAGTGGCAGGAGGGAGCTTTGCGCGATGGAGATTGGATGGCCTTCCAATGTGCGGCATGTTGCACATGTCACATTTGATAGATTCAATGGTTTCTTGGGTTTGCCTCACGAGTTCGAACCTGAAGTGCCCAGAAGGCCCCCTAGTGCTAGTGCAACTGTTTTTGGAGTTTCGACGGAATCCATGCAGTTATCATATGACTCAAGAGGGAACATTGTGCCAACAATTTTGTTACGAATGCAGAAACGCTTATATTCTCAAGGAGGGTTGCAGGCAGAAGGGATTTTCAGAATCAATGGAGAAAATAGTCAAGAGGAATATGTTAGGGACCAATTAAATAGTGGAGTGGTCCCACAGGGCATTGATGTACATTGTTTGGCGGGGCTTATCAAGGCTTGGTTACGAGAGCTGCCACGGGGTGTTCTGGATTCTTTATCCCCAGAGCAGGTAACACAATGCCAGACCGAGGAGGAATGTGCTGAACTAGTGAGGCATCTACCTCCTACTGAAGCTGCCCTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTACTGCAGGAACAACTGAACAAGATGAATGCACGCAACATTGCCATGGTTTTTGCGCCAAACATGACTCAGATGGCAGATCCTTTAACTGCGTTAATGTACGCAGTCCAAGTGATGAATTTCTTAAAGACACTTGTACTAAAGACCCTCCGAGTAAGAAAGAATTTGTTGGTAGACTCTCCTCAATTTCATTTCGAGCCTTCGGATGAGGATGAACACCATAGCCCTTTGCAATCCTGCCAGAGAGATGCTAATGGAGAAAGTGAAGATGCTCAGGAAAACTACATTTCTGAGAAAACTATCCAAGAATGTTCCCACAACTCAACTCACCAAAGCATTAACCTAACTGGAGAAGAATCTAGCAGTTTGTTAACCTCTTCTGAGCATCTAGTTTGTGATGGAGGTTTATATTGTACGTTTTCGCCCAAAGGAAATGATGGGAAGAGTAAAACTGACCAACCAAGTAATCCAAATCCTAGAAGGAAGAACAAAAAAGCCAGGGTACAACAAACTACAATACATGGAAAAGTGCTTGTTGAGAAGAGGAGGATTAGCAGTCTGAGTAGGTTGGATTCAAGATCAGAGAGGATAGAAGCCTGGAGGTGA 1428 0.4657 MIEVLHSSSHFSCSSTITSPSSSCATPPGDGIFIICDQEPPSPSSLAVEGCSPATDCDAEELEERDKRRTEQLSLLALVVAIFRKSLLACKSGRRELCAMEIGWPSNVRHVAHVTFDRFNGFLGLPHEFEPEVPRRPPSASATVFGVSTESMQLSYDSRGNIVPTILLRMQKRLYSQGGLQAEGIFRINGENSQEEYVRDQLNSGVVPQGIDVHCLAGLIKAWLRELPRGVLDSLSPEQVTQCQTEEECAELVRHLPPTEAALLDWAINLMADVVLQEQLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVLKTLRVRKNLLVDSPQFHFEPSDEDEHHSPLQSCQRDANGESEDAQENYISEKTIQECSHNSTHQSINLTGEESSSLLTSSEHLVCDGGLYCTFSPKGNDGKSKTDQPSNPNPRRKNKKARVQQTTIHGKVLVEKRRISSLSRLDSRSERIEAWR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1062 475 SMART RhoGAP_3 161 324 IPR000198 GO:0007165
Lele09g1062 475 CDD CRIB 100 140 - -
Lele09g1062 475 Pfam RhoGAP domain 164 298 IPR000198 GO:0007165
Lele09g1062 475 Gene3D CRIB domain 98 131 IPR036936 -
Lele09g1062 475 FunFam Rho GTPase-activating protein 5 132 325 - -
Lele09g1062 475 MobiDBLite consensus disorder prediction 339 365 - -
Lele09g1062 475 MobiDBLite consensus disorder prediction 1 24 - -
Lele09g1062 475 MobiDBLite consensus disorder prediction 416 447 - -
Lele09g1062 475 Pfam P21-Rho-binding domain 101 128 IPR000095 -
Lele09g1062 475 ProSiteProfiles Rho GTPase-activating proteins domain profile. 147 327 IPR000198 GO:0007165
Lele09g1062 475 PANTHER MKIAA1688 PROTEIN 1 386 IPR044785 GO:0005096
Lele09g1062 475 MobiDBLite consensus disorder prediction 7 24 - -
Lele09g1062 475 Gene3D Rho GTPase activation protein 135 330 IPR008936 -
Lele09g1062 475 ProSiteProfiles CRIB domain profile. 102 115 IPR000095 -
Lele09g1062 475 SMART PBD_5 102 136 IPR000095 -
Lele09g1062 475 CDD RhoGAP 164 319 - -
Lele09g1062 475 SUPERFAMILY GTPase activation domain, GAP 142 320 IPR008936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1062 Lele-ChrLele09 19835665 19838550 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1062 09 19835665 19838550 Lele29g0356 29 2208464 2211133 CCT
Lele09g1062 09 19835665 19838550 Lele30g1045 30 13764212 13766530 CCT
Lele09g1062 09 19835665 19838550 Lele31g1183 31 18276334 18278975 CCT
Lele09g1062 09 19835665 19838550 Lele32g0346 32 2170759 2173060 CCT
Lele09g1062 09 19835665 19838550 Lele11g1064 11 17898151 17901006 hybridization
Lele09g1062 09 19835665 19838550 Lele12g0253 12 2220678 2227066 hybridization