Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1041 ATGGATGAAATCGATGTTCCTTATCATTTTCTCTGCCCCATTTCCTTGCAGCTTATGAGAGACCCCATCACGGTTTGCACCGGAATCACTTACGATAGAGAAAACATTGAAACATGGCTGTTTTCATGCAAGAACAGAACGTGCCCAGTGACGAAACAATCCATTTTAGATACAGATCTCACCCCTAACCACACGCTTCGACGTCTGATTCAAGCTTGGTGCACTCTCAACGCCTCGTTCGGGATCGAGCGGATTCCGACACCGAAGCCGGCCATCGACAAAACGCAGATCACCAAACTCCTCTCTGAAGCAAACCAGTCCCCTCACAACCACCTCAAATGTCTCACAAGGCTTCGATCCATCGCCTTCGAAAGCGAAAGGAACAAGATTTATTTGGAGTCTGCAGGGGCAATAGAGTTCTTAGCTTCAACCTTGAAATTTAGTACTAGAGACGCCCAACTCAACCACGATCATGATGAAGAATATACTTCCGTTATGGGTAATGAAGCAGCACTTGAGGTTCTGTACCATCTAAATCCTTCAGAATCTCACATTAAAAACCTAGTAAGCAACGAGGGGATTAAATTCATCGACTCCTTGATCCAAATCCTGAGGAACGGGAACTACCAATCACGAGCTTATGCGACAATATTACTAAAAGCAGCGTTGGGAGTGTCAGATCCAAGCCAACTGATCAATGTGAGAACTGAACTGTTCGTGGAGCTCATGAGAGTGTTACGAGATAATATTTCACAGCAAGCTTCAAAGGCAGCGTTGAAGCTGGTGGTGGAGCTGTGTCCATGGGGGAAGAACAGAATCAAAGCGGTAGAAGGCGGCGTCGCTTTGGTGCTGATCGAGATGCTTCTAGAAGCATCGGAGAGAAGAGCGTGTGAACTGATTCTGATAGCGTTAGATCAGCTGTGTGGGTGTGCGGAAGGAAGAGCGGAGTTGCTGAAGCATGGTGCCGGAGTCGCCATCGTGTCGAAGAAGATTCTGAGGGTATCACGCGTGGCAACGGATAGAGGGGTGAAGATATTGAGCTCAATTTGTAGGTATTCGGCGAATGCGAAGGTGGCTCAGGAAATGTTGCAGGTGGGTGCAGTTTGTAAGCTGTGTTTGGTGATGCAAGTGGAAGCGAGCTTGAAGACGAAGGAGAGGGCAAAGGAGGTTCTGAAATTGCACTCCAACGTTTGGAGGAATTCAGCTTGTATTCCTCCTCCTTTGTTCCAATCCTATCCTTGA 1242 0.4742 MDEIDVPYHFLCPISLQLMRDPITVCTGITYDRENIETWLFSCKNRTCPVTKQSILDTDLTPNHTLRRLIQAWCTLNASFGIERIPTPKPAIDKTQITKLLSEANQSPHNHLKCLTRLRSIAFESERNKIYLESAGAIEFLASTLKFSTRDAQLNHDHDEEYTSVMGNEAALEVLYHLNPSESHIKNLVSNEGIKFIDSLIQILRNGNYQSRAYATILLKAALGVSDPSQLINVRTELFVELMRVLRDNISQQASKAALKLVVELCPWGKNRIKAVEGGVALVLIEMLLEASERRACELILIALDQLCGCAEGRAELLKHGAGVAIVSKKILRVSRVATDRGVKILSSICRYSANAKVAQEMLQVGAVCKLCLVMQVEASLKTKERAKEVLKLHSNVWRNSACIPPPLFQSYP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1041 413 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Lele09g1041 413 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lele09g1041 413 Gene3D - 95 404 IPR011989 -
Lele09g1041 413 PANTHER WDSAM1 PROTEIN 3 405 IPR045185 GO:0061630
Lele09g1041 413 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Lele09g1041 413 SUPERFAMILY RING/U-box 3 77 - -
Lele09g1041 413 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Lele09g1041 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Lele09g1041 413 SUPERFAMILY ARM repeat 98 375 IPR016024 -
Lele09g1041 413 FunFam RING-type E3 ubiquitin transferase 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1041 Lele-ChrLele09 19621306 19622547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1041 1 413 U-box Gene Family AT3G52450 52.074 5.42e-152 436