Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1029 ATGGTTTCTCGCATCTATGGCGTCGCCAAGCTCCTCACTTTCCTTCTTCTTCTTCTCTTCAGTTTCCCACTTGCATTGTCGGAAATGCCAAATCCCAGGTCGTCTGTCTCTTCTTCGGTCAGCTCCGGTCAGATAAACTCCAACTCGGTTCTGGTAGCTCTTCTTGACTCGCATTACACGGAACTTGCTGAGCTTGTGGAGAAGGCTATGCTCTTGCAGACTCTGGAGGATACTGTCGGCAGCCACAATATCACCATCTTCGCACCCAGAAATGAAGCTCTCGAACGCGATCTCGACCAGGAGTTCAAGCGCTTCCTTCTCGAACCCGGTAATCTCAAGTCTCTCCAGACTTTACTAATGTTCCATATCATTCCTACCAGAATCGGATCGGGGCAGCTTCTGACTCGGACCGGGTTGGCCCGTCACGATACGCTTTCCAATGACTATCTGCATCTTGAGAAGAATGGGACTACGGAATGGACAGTGGATCGCGCCAAGATTATCCAACCTGATGCGGTGACCCGACCCGATGGCGTCATCCACGGGATTGAGCGCCTCTTGGTGCCACGTTCAGTGCAGGATGACTTCAACCGCCGGCGAAGCCTGCAGTCTATCACGGCGGTGAAGCCAGAGGGAGCACCGGAAGTGGACCCGAGGACTCATCGGCTCAAGAAACCCGCCCCACCGGCGAAACCCGGTTCTTCTCCTGCTTTGCCAATCTACGATGCAATGGCTCCTGGACCCTCACTAGCTCCTGCTCCAGCGCCAGGACCAGGCGGCCCCCACCACCACTTCAACGGTGAAGCTCAGGTGAAGGATTTCATTCAGACACTTCTCCATTATGGCGGGTACAATGAAATGGCAGATATATTGGTGAATCTAACATCCTTAGCCACCGAAATGGGTCGACTCGTCTCCGAGGGGTACGTGCTCACCGTTTTGGCTCCCAATGATGAGGCAATGGCTAAATTAACCACCGACCAATTGAGTGAACCAGGCGCACCGGAACAGATTATCTATTACCATCTCATACCGGAGTATCAAACAGAAGAGAGTATGTACAATGCAGTCCGACGGTTCGGTAAGGTCCGGTATGATACCCTACGGTTGCCGCATAAGGTGGTGGCTCAGGAGGCAGATGGATCAGTGAAATTCGGGCAGGGAGACGGGTCGGCGTATTTGTTCGACCCGGATATCTATACGGATGGGCGGATCTCGGTTCAGGGCATCGATAACGTATTGTTGCCACAGGAGGAGGAGACGAAGCCCATTAACAGAACGGTTCAACCCGCTAAGGCCGTAGTCAAGCACAGAAGAGGAAAATTACAGGAGGCAGCGTGCTGGGTGCTTGGAACCATTGGACAACATGGTAGATTCACCACTTGCCACTGA 1392 0.5302 MVSRIYGVAKLLTFLLLLLFSFPLALSEMPNPRSSVSSSVSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGSHNITIFAPRNEALERDLDQEFKRFLLEPGNLKSLQTLLMFHIIPTRIGSGQLLTRTGLARHDTLSNDYLHLEKNGTTEWTVDRAKIIQPDAVTRPDGVIHGIERLLVPRSVQDDFNRRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPAKPGSSPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIIYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGDGSAYLFDPDIYTDGRISVQGIDNVLLPQEEETKPINRTVQPAKAVVKHRRGKLQEAACWVLGTIGQHGRFTTCH 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1029 463 SUPERFAMILY FAS1 domain 50 190 IPR036378 -
Lele09g1029 463 Pfam Fasciclin domain 296 416 IPR000782 -
Lele09g1029 463 Pfam Fasciclin domain 58 189 IPR000782 -
Lele09g1029 463 ProSiteProfiles FAS1/BIgH3 domain profile. 271 399 IPR000782 -
Lele09g1029 463 MobiDBLite consensus disorder prediction 209 266 - -
Lele09g1029 463 Gene3D FAS1 domain 290 416 IPR036378 -
Lele09g1029 463 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 3 461 IPR044654 -
Lele09g1029 463 SUPERFAMILY FAS1 domain 250 417 IPR036378 -
Lele09g1029 463 SMART fasc_3 312 417 IPR000782 -
Lele09g1029 463 SMART fasc_3 85 190 IPR000782 -
Lele09g1029 463 ProSiteProfiles FAS1/BIgH3 domain profile. 46 187 IPR000782 -
Lele09g1029 463 Gene3D FAS1 domain 50 190 IPR036378 -
Lele09g1029 463 FunFam Fasciclin-like arabinogalactan protein 16 266 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1029 Lele-ChrLele09 19469420 19472018 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1139 31 18036311 18041910 Lele09g1029 09 19469420 19472018 CCT
Lele32g0385 32 2386235 2391359 Lele09g1029 09 19469420 19472018 CCT
Lele09g1029 09 19469420 19472018 Lele11g1032 11 17498418 17501019 hybridization
Lele09g1029 09 19469420 19472018 Lele12g0294 12 2669191 2671602 hybridization