Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1027 ATGGAGGGTCCGGAGTTGGAAGAGAATAAGAATTCTGAAGTGCATTTGACTTCTGCTGCAGCCTTTGTGGAGGGTGGAATCCAGGATGCTTGTGATGATGCTTGTAGTATATGTCTTGAAGCATTTCATGACAGTGATCCTTCAACAGTGACAAGTTGCAAACATGAGTTTCATCTTCAATGCATTCTAGAATGGTCTCAAAGAAGCTCTCAATGCCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCAACAAGTCAGGAATTACTTGAAGCGGTGGAAAGAGAGAGAAACATTAGGTTGAATCCACCTAGAAATGCCACAATATTTCATCATCCTGCTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATTATACAGCACTTAGCTGCTGCTGCAGCAATGGGACGAGCACGCCATATTTCTAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTATTTTCAACCCATCCTAATTCACCTCCCATGGCTCCTGCCTCTCCAACTCATGGGGCAAATGGTGAACCAGCTTCAGCAATCACTGTTGCTACTCTATCTCCAACTCCTGCTGCTGGAGAAGAATCATCACAGTCAACTTCTGTTCCTTTTGTTCAAGCAGATCATGTTTTTGGTTCAGGATCAGGATCTACTGTTCTTGCTGCTGATAGCCAAGGATCATCATACAACATTAGGAGCTCTCCGAGCCAGTCTTCTCCAAGCAGTCAGGACAGAGCAGGGCCATCAGAATTCCAATCATTTTCAGAATCTTTGAAGTCTAGACTAAATGCAGTTTCAACGAGATACAAAGAGTCGATATCCAGGAGCACCAGAGGTTGGAAGGAGAGATGGTTCTCTCGCAACAGCTCTATGCCTGATGTGGGATCTGAAGGAAGACAAGAGGTTAATTCAGGTATTGCAACTGTGTCACGCATGATGGAACGACTAGATACCAGAGACAACAGTAGAAATGATAGCAATCCTGCTCAAAGTCATTTAGAAGGTGCTTCGGTTGCTGGAGCAAATGACCAACATATTTCAGATGCCGAAGGTGAAAGTCCCTTGAGAGATAATAACACAAAAACATCCTTTGCAGCTGGTTCTAGTTCAAATTAA 1170 0.4419 MEGPELEENKNSEVHLTSAAAFVEGGIQDACDDACSICLEAFHDSDPSTVTSCKHEFHLQCILEWSQRSSQCPMCWQPISLKDPTSQELLEAVERERNIRLNPPRNATIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHISRREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASPTHGANGEPASAITVATLSPTPAAGEESSQSTSVPFVQADHVFGSGSGSTVLAADSQGSSYNIRSSPSQSSPSSQDRAGPSEFQSFSESLKSRLNAVSTRYKESISRSTRGWKERWFSRNSSMPDVGSEGRQEVNSGIATVSRMMERLDTRDNSRNDSNPAQSHLEGASVAGANDQHISDAEGESPLRDNNTKTSFAAGSSSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1027 389 MobiDBLite consensus disorder prediction 374 389 - -
Lele09g1027 389 SMART ring_2 35 75 IPR001841 -
Lele09g1027 389 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Lele09g1027 389 MobiDBLite consensus disorder prediction 243 273 - -
Lele09g1027 389 Pfam Ring finger domain 34 75 IPR001841 -
Lele09g1027 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 19 84 - -
Lele09g1027 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 84 IPR013083 -
Lele09g1027 389 SUPERFAMILY RING/U-box 28 83 - -
Lele09g1027 389 MobiDBLite consensus disorder prediction 331 389 - -
Lele09g1027 389 MobiDBLite consensus disorder prediction 148 195 - -
Lele09g1027 389 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1027 Lele-ChrLele09 19456402 19462467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1027 32 83 C3H Transcription Factor Family AT4G00335 44.231 7.18e-12 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1027 09 19456402 19462467 Lele11g1031 11 17489309 17493315 hybridization
Lele09g1027 09 19456402 19462467 Lele12g0295 12 2679876 2683630 hybridization