Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1018 ATGAACTGGAGTAGAGGCAGCATCCTCGGCCATGGCTCGTCTGCCACAGTCTCTTTGGCTGCATCTGAACAGTGCGGCGAAGCGTTCTTCGCCGTCAAGTCATCAGATCTTTCGGTTTCAGGATTGTTACAGAGAGAGCAGAGGATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGGTGTGACATCACGAGGGAGAACAACAAGGTCTTGTACAATCTTTTCATGGAGTATATGCCTCTCGGAACGCTTACTCAAGCTACTCACCGGCAGGGTAGCCGACTCGATGAGCCGATGATCGCGTACTACATTCGGCAAGTTTTGCAGGGGCTGGAGTATATACATTCAAATGGGCTCGTACATTGTGACATTAAGGGTCCCAATATCTTAATTGGAGAAGATGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCGTGCCACGGCGGCCGCGGCGCCGATAAGTGGGACGCCGATGTTTATGGCGCCGGAGGTGGCTCGGGGGGAAGAACAGGGGTATCCTTGTGACATCTGGGCACTTGGGTGCACAGTAATTGAAGTGGCTTCAGGGGTTTCACCATGGCCTAATGTAGGAGACCCTGTTTCGATTCTTTACCGGATAGCATATTCCGGCGAGGTGCCGGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCGAAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTGTCGGGGAATTGAATTCCAATTCGAAGCAGCAGCAAATCCACGAATCTAATTCAAGTTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAGTGGAAGAATCATCATCATCATCATCATCAGAGACCGTGAGCAACCTTCTTCTCCATAATCATACAAGTTTCGAAAATTCGCCAGCTGTTAGAATCAAACGGTTAGCTGTAAGTTCAGGGGAACCCAATTGGATACAAGACGAGAATTGGATCACAACGATAGGGAACGAAGAAGGATGCGAAGCATCAATCCGCAATAATTTGAAAGAGTCAGAGGAAAGCAATGTCATTAGTAGTAGAATTAGTGATTATTTTTGGGATAATTACGAATGTACGGAAGTTAGTGTTAGAACAAGTAGTATCATTCATCATCATCAAGTATCAAATTTTTTATAA 1191 0.4593 MNWSRGSILGHGSSATVSLAASEQCGEAFFAVKSSDLSVSGLLQREQRILSSLSSPYIVSYKGCDITRENNKVLYNLFMEYMPLGTLTQATHRQGSRLDEPMIAYYIRQVLQGLEYIHSNGLVHCDIKGPNILIGEDGAKIADFGCAKRATAAAAPISGTPMFMAPEVARGEEQGYPCDIWALGCTVIEVASGVSPWPNVGDPVSILYRIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFVGELNSNSKQQQIHESNSSSPTSILEQGFWSSVEESSSSSSSETVSNLLLHNHTSFENSPAVRIKRLAVSSGEPNWIQDENWITTIGNEEGCEASIRNNLKESEESNVISSRISDYFWDNYECTEVSVRTSSIIHHHQVSNFL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1018 396 Gene3D Transferase(Phosphotransferase) domain 1 2 324 - -
Lele09g1018 396 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele09g1018 396 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele09g1018 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 302 - -
Lele09g1018 396 FunFam Mitogen-activated protein kinase kinase kinase 17 2 316 - -
Lele09g1018 396 CDD STKc_MAPKKK 2 254 - -
Lele09g1018 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Lele09g1018 396 SUPERFAMILY Protein kinase-like (PK-like) 2 304 IPR011009 -
Lele09g1018 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lele09g1018 396 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1018 Lele-ChrLele09 19359576 19360766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1018 2 372 MAP Kinase Kinase Kinase AT5G55090 48.042 5.06e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele09g1018 Pkinase 1.1e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0421 29 2586889 2590350 Lele09g1018 09 19359576 19360766 CCT
Lele30g0988 30 13377953 13381297 Lele09g1018 09 19359576 19360766 CCT
Lele09g1018 09 19359576 19360766 Lele09g1018 09 19359576 19360766 ECH
Lele09g1018 09 19359576 19360766 Lele11g1025 11 17404746 17405936 hybridization
Lele09g1018 09 19359576 19360766 Lele12g0302 12 2776733 2777935 hybridization