Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1009 ATGCCACTGAAGAGCTTTGCTCCATTTCCTTTCCCAATCAATCCCTCTTCCTCTCACTGCTTCCTTCCTTATCCTGACTCAGCCCATCCTGTCTTTGGATGCGCGATCGTCGCCATGTATGCGCAATCTTCTTCTTCACTCCTCAGAGCTGCCAGAACTAGGCTTTCGCATCCCTCTTTGTCTAGAACCCTCGCACATCCACCTGTGAGACCGCCTCCTACCCTCCGATCTCTTAGCTTCTTTTCCTCGCCCCGATCATTCCGCAGTTTCGCTCCCCGCTGGAGCCACGGCGTCCTCTGGAGGTCTCCGGTCAGTCTCAGGGCTCAGATCAGAGCCGTCGCTCCTATGATTGAGCAGTTCCAACGCAAGATTGCTTCCATGGCTGGTGAAAATCCTTTCAAGGCGAACTTGACGAGTCTCCCTAAGCCTGGGGGTGGTGAGTTCGGAAAGTTCTACAGCCTTCCTTCTCTGAACGATCCAAGAATTGATAGGTTACCTTATTCTATCAGAATTCTCCTGGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTTAAGAAAGAAGATATTGAGAAGATTATTGATTGGGAAAATAGTTCTGTTAAGCAAGTTGAAATTCCTTTCAAGCCTGCTCGTGTTCTCCTGCAGGATTTTACAGGAGTCCCGGCTGTTGTTGACCTAGCTTGTATGCGTGATGCTATGAATAAGCTTGGCAGCGATTCTAGCAAGATAAATCCTCTGGTACCTGTTGATCTTGTTATCGATCATTCAGTTCAAGTTGATGTAACAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAAAGAAACAAGGAAAGATTTGCATTTCTTAAATGGGGGTCGAATGCTTTCCGCAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTACATCAGGTGAATCTTGAGTACCTTGGACGTGTTGTTTTCAACAGTGATGGCTTGCTCTATCCTGACAGTGTGGTTGGTACTGATTCCCACACTACTATGATAGATGGGCTTGGGGTCGCTGGTTGGGGTGTTGGAGGCATCGAAGCAGAGGCAGCAATGCTTGGTCAGCCTATGAGTATGGTTTTGCCTGGTGTTGTTGGATTCAAGTTATCTGGGAAACTGCACAATGGTGTTACAGCAACTGATTTGGTTTTAACTGTTACCCAAATGCTGAGGAAGCATGGAGTTGTTGGGAAATTTGTTGAATTTTATGGGGATGGCATGGGTGAGCTATCATTAGCTGATAGGGCCACCATCGCTAACATGTCTCCTGAGTATGGTGCCACCATGGGCTTCTTCCCTGTAGATCATGTTACTTTACAATACCTCAAGTTAACCGGAAGAAGTGACGAGACAGTTGCTATGATAGAGGAATATCTCAGGGCAAACAAAATGTTTGTTGACTATAATGAGCCTCAACAAGAAAGAGCATATTCATCCTATCTTGAACTAAACCTTTCTGATGTTGAGCCCTGTATCTCGGGACCAAAGAGACCTCATGATCGGGTGCTTTTGAAAGAAATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGCTGGGTTTAAGGGATTTGCTATACCAAAAGAAGCCCAGGGTAAAGTTGCAAAATTTCAATTCCACGGGCAACCAGCAGAGCTCAAGCATGGAAGTGTTGTCATTGCTGCAATCACAAGCTGTACTAACACTTCAAACCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCGAAAAAGGCTTACGAGCTTGGTTTGCAGGTCAAACCTTGGGTAAAAACAAGTCTTGCTCCAGGCTCTGGAGTGGTTACAAAGTATCTGCTTCAAAGTGGACTGCAGAAGTTTCTAAATGAGCAGGGTTTCAATATTGTTGGATATGGCTGCACAACATGTATTGGCAATTCAGGGGAATTGGATGAATCAGTTTCTGCTGCCATTTCAGAAAATGACATTGTAGCAGCTGCTGTGCTATCTGGAAACCGTAATTTTGAGGGTCGCGTGCATCCCTTAACCAGGGCTAACTATCTTGCCTCACCTCCTTTGGTTGTTGCTTATGCTCTTGCTGGCACGGTTAATATTGACTTTGAAAAAGAGCCAATTGGGACAGGGAAGGATGGTATGAGTATCTTCTTGAGGGATGTTTGGCCATCCACTGAAGAAATTGCTGAGGCTGTCCAATCTAGCGTGTTGCCTGACATGTTCCGAAGCACCTATGAGGCTATTACCAAGGGCAATCCTATGTGGAATCAACTACAAGTTCCCGTGGAGACCCTTTATTCATGGGACCTCAACTCAACATATATTCATGAACCTCCATACTTTAAGGGCATGACCATGGATACTCCTGGTGCTCATGGCGTGAAGGATGCATATTGCCTGCTGAATTTTGGTGACAGTATCACTACTGATCACATTTCTCCAGCAGGAAGCATTCATAAGGACAGTCCTGCTGCAAAATTCTTGCTAGAGCGTGGAGTGGATCGCAAGGACTTTAATTCTTATGGAAGTCGTCGTGGCAATGACGAAATAATGGCAAGGGGGACTTTTGCTAACATCCGTCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCAAAACCGTTCACATTCCATCAGGGGAGAAACTCTCTGTATTTGATGCAGCAATGAAATACAAAGCTGCCGGGCAGGGCACCATTGTGCTGGCTGGTGCTGAATATGGTAGTGGAAGTTCAAGAGATTGGGCTGCCAAGAGTCCAATGCTATTGGGAGTCAAAGCAGTGATTGCCAAGAGTTTTGAGAGAATTCATCGTAGTAATTTGGTAGGCATGGGCATTATTCCTCTTTGCTTCAAATCTGGCGAGGATGCTGACACACTTGGATTGACTGGTCATGAACGATACTCAATTGATCTCCCAAGTAAAATTAGTGACATAACGCCTGGCCAAGATGTCACTGTCACCACTGATTCTGGAAAATCTTTCACCTGCACAGTACGCTTTGACACCGAGGTGGAACTTGCTTACTTCAATCACGGAGGCATCCTTCCATATGTTATAAGGAACCTCATTCAGCAGTGA 3075 0.4569 MPLKSFAPFPFPINPSSSHCFLPYPDSAHPVFGCAIVAMYAQSSSSLLRAARTRLSHPSLSRTLAHPPVRPPPTLRSLSFFSSPRSFRSFAPRWSHGVLWRSPVSLRAQIRAVAPMIEQFQRKIASMAGENPFKANLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSSVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSSKINPLVPVDLVIDHSVQVDVTRSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNSDGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEEYLRANKMFVDYNEPQQERAYSSYLELNLSDVEPCISGPKRPHDRVLLKEMKADWHACLDNKAGFKGFAIPKEAQGKVAKFQFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAYELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKFLNEQGFNIVGYGCTTCIGNSGELDESVSAAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVNIDFEKEPIGTGKDGMSIFLRDVWPSTEEIAEAVQSSVLPDMFRSTYEAITKGNPMWNQLQVPVETLYSWDLNSTYIHEPPYFKGMTMDTPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAAMKYKAAGQGTIVLAGAEYGSGSSRDWAAKSPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYSIDLPSKISDITPGQDVTVTTDSGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIQQ 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1009 1024 TIGRFAM aconitase_1: aconitate hydratase 1 149 1022 IPR006249 -
Lele09g1009 1024 Pfam Aconitase family (aconitate hydratase) 191 694 IPR001030 -
Lele09g1009 1024 FunFam Aconitate hydratase 786 1023 - -
Lele09g1009 1024 Pfam Aconitase C-terminal domain 823 950 IPR000573 -
Lele09g1009 1024 ProSitePatterns Aconitase family signature 1. 559 575 IPR018136 -
Lele09g1009 1024 PRINTS Aconitase family signature 273 286 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 402 415 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 340 355 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 625 638 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 326 339 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 498 512 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 563 574 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 297 305 IPR001030 -
Lele09g1009 1024 PRINTS Aconitase family signature 416 429 IPR001030 -
Lele09g1009 1024 SUPERFAMILY LeuD/IlvD-like 763 1021 - -
Lele09g1009 1024 CDD AcnA_IRP 212 696 - -
Lele09g1009 1024 Gene3D Aconitase, domain 4 787 1023 IPR015928 -
Lele09g1009 1024 SUPERFAMILY Aconitase iron-sulfur domain 145 759 IPR036008 -
Lele09g1009 1024 Gene3D Aconitase, domain 3 130 498 IPR015931 -
Lele09g1009 1024 Gene3D - 723 784 - -
Lele09g1009 1024 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 125 1021 IPR006249 -
Lele09g1009 1024 Gene3D Aconitase, domain 3 499 722 IPR015931 -
Lele09g1009 1024 FunFam cytoplasmic aconitate hydratase 499 722 - -
Lele09g1009 1024 FunFam Aconitate hydratase 131 498 - -
Lele09g1009 1024 CDD AcnA_IRP_Swivel 800 970 IPR044137 -
Lele09g1009 1024 ProSitePatterns Aconitase family signature 2. 625 638 IPR018136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1009 Lele-ChrLele09 19132519 19148816 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1106 31 17791627 17792820 Lele09g1009 09 19132519 19148816 CCT
Lele32g0419 32 2642419 2643603 Lele09g1009 09 19132519 19148816 CCT
Lele09g1009 09 19132519 19148816 Lele09g1009 09 19132519 19148816 ECH
Lele09g1009 09 19132519 19148816 Lele11g1011 11 17215001 17223284 hybridization
Lele09g1009 09 19132519 19148816 Lele12g0309 12 2892494 2900094 hybridization