Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g1002 ATGTTCCAGCCAAACATGATTGAAGCAGTTCATCAGCTCCACCACCACCACCCATTGGACATGGCTCCAAACACTACCTCCGAGAGCGATGTCCCCAGAATCCGAGGAGAAGACGACTTCGACAGTGCCACCAAGTCCGGCAGTGAAAACAACCAGGAAGCCGCCTCCGGCGACGACCATGATCCCCGTCCCAACAAGAAGAAGCGCTACCACCGCCACACCCAACACCAGATCCTGGAAATGGAAGCTTTCTTTAAGGAGTGTCCTCATCCAGATGACAAGCAGAGAAAGGAACTGGGCCGGGAATTAGGGTTAGAGCCATTGCAGATCAAGTTTTGGTTCCAAAACAAGCGTACTCAGATGAAGACCCAACATGAGCGGCAAGAGAACTCACAACTTAGAGCTGAAAATGACAAGCTTCGAGCAGATAACATGAGGTATAGAGAAGCTCTTAGCAATGCCTCATGTCCAAATTGCGGTGGACCAACCGCCATAGGCGAAATGTCTTTCGATGAACATCATCTGAGAATGGAAAATGCTCGCCTACGAGAAGAGATTGATAGGATTTCAACAATTGCAGCAAAGTACGTGGGGAAGCCAGTGGTGAACTATCCACTACTTTCACCAACAAGTAGTATTCCTCCGCGGCCACTGGAACCGGGTGTGGGTGGTTTTGGAGGCGGCGACGACATATATGGAGGTGGTGGTGATGTTGTTAGGTCTATAAGTGGGCCGAGCGAAGACGATAAGCCGATGATAATAGAGCTAGCTGTGGCTGCCATGGAAGAACTTGTGAGGATGGCACAAATGGGTGAGCCCTTATGGATGATAACTCTTGATGGAACTACCTCTGTTCTTAACGAGGATGAATATATCCGAAGTTTCCCTCGTGGGATTGGTCCAAAACCTGATGGATTCAAGTGTGAAGCTTCTCGAGAAACTGCAGTTGTTATCATGAATCATATTAGTCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCCACAGTGTTCTCCGGTATAGTCTCAAGAGCAATGACACTGGAAGTATTATCAACAGGAGTGGCTGGGAATTACAATGGAGCCTTGCAAGTGATGACAGCAGAGCTACAAGTACCTACACCACTAGTGCCAACTCGAGAGAGTTATTTTGTGAGATATTGCAAACAGCATGGTGAAGGGACATGGGCAGTGGTGGATGTGTCGTTGGATAATTTGCGGCCTAGCCCTTCAGTTGGATGTAGAAGAAGGCCTTCCGGCTGCTTAATTCATGAAATGCCTAATGGCTACTCAAAGGTGACGTGGGTTGAGCATGTAGAAGTAGACGATAGAGGAGTTCATGATCTATACAAACAACTCGTCAGCTCTAGAAATGCTTTTGGGGCAAAACGTTGGGTGGCTACCTTGGATCGACAATGTGAAAGGCTTGCTAGTTCCATGGCAACCAATATTCCTACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTGATGAGTTTTTGTGCAGGAGTGAGTGCTTCTACTGCTCAGACGTGGACTACACTCTCTGGAACTGGGGATGATGACGTACGGGTCATGACCCGTAAGAGTGTGGATGACCCGGGAAGACCTCCTGGCATTTTTCTCAGTGCTGCAACTTCTTTCTGGCTTCCAGTTCCTCCTAATCGAGTCTTTGATTTCCTCCGTGATGAGAATTCCAGAAACGAGTGGGATATTCTTTCAAATGGTGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGACAGGACACAGGGAATTGTGTATCACTGCTTCGGGTAAATAGTGCGAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAAAGCTGCAGAGACAGAACGGGGTCGTTTGTGGTATATGCACCAGTGGATATATTGGCAATGAACGTGGTTCTAAATGGAGGGGATCCTGATTACGTGGCACTTCTTCCTTCTGGATTTGCTATACTGCCAGATGATAATAATGGTGGATCTCTCTTAACTGTTGCATTCCAAATTTTGGTGGACTCAGTTCCCACAGCAAAACTCTCTCTTGGATCTGTTGCCACTGTTAATAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTTCTTTATCCTGTGAAGCTGCTTCCTAA 2175 0.469 MFQPNMIEAVHQLHHHHPLDMAPNTTSESDVPRIRGEDDFDSATKSGSENNQEAASGDDHDPRPNKKKRYHRHTQHQILEMEAFFKECPHPDDKQRKELGRELGLEPLQIKFWFQNKRTQMKTQHERQENSQLRAENDKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRMENARLREEIDRISTIAAKYVGKPVVNYPLLSPTSSIPPRPLEPGVGGFGGGDDIYGGGGDVVRSISGPSEDDKPMIIELAVAAMEELVRMAQMGEPLWMITLDGTTSVLNEDEYIRSFPRGIGPKPDGFKCEASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPSPSVGCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSSRNAFGAKRWVATLDRQCERLASSMATNIPTGDVGVITNQEGRKSMLKLAERMVMSFCAGVSASTAQTWTTLSGTGDDDVRVMTRKSVDDPGRPPGIFLSAATSFWLPVPPNRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCRDRTGSFVVYAPVDILAMNVVLNGGDPDYVALLPSGFAILPDDNNGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAAS 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g1002 724 SMART HOX_1 65 128 IPR001356 GO:0003677
Lele09g1002 724 CDD homeodomain 67 125 IPR001356 GO:0003677
Lele09g1002 724 SUPERFAMILY Homeodomain-like 59 129 IPR009057 -
Lele09g1002 724 CDD START_ArGLABRA2_like 250 474 - -
Lele09g1002 724 Gene3D - 305 468 IPR023393 -
Lele09g1002 724 Pfam Homeodomain 67 122 IPR001356 GO:0003677
Lele09g1002 724 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 65 718 IPR042160 -
Lele09g1002 724 Pfam START domain 256 475 IPR002913 GO:0008289
Lele09g1002 724 SUPERFAMILY Bet v1-like 248 477 - -
Lele09g1002 724 FunFam Homeobox-leucine zipper protein GLABRA 2 255 474 - -
Lele09g1002 724 Gene3D - 52 141 - -
Lele09g1002 724 FunFam Homeobox-leucine zipper protein HDG1 52 140 - -
Lele09g1002 724 ProSiteProfiles START domain profile. 246 478 IPR002913 GO:0008289
Lele09g1002 724 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Lele09g1002 724 Coils Coil 123 150 - -
Lele09g1002 724 SMART START_1 255 475 IPR002913 GO:0008289
Lele09g1002 724 MobiDBLite consensus disorder prediction 15 73 - -
Lele09g1002 724 SUPERFAMILY Bet v1-like 494 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g1002 Lele-ChrLele09 19001070 19004872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g1002 1 723 Homeobox Transcription Factor Family AT1G05230 76.022 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele09g1002 START 4.7e-57 CL0209