LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0997	ATGAGGGTTGTTATCGCCACAAGAACAAACCAGTTTTTCATTGAAGTAGAAAGCCAAGAAAAAGTAGTTGAAATCAAAAGGAAAATAGAACAAATCCTCAGCATCCCAGTGGCTTCACAGATTCTTACTGTATCTGGGTGGGAGCTTATAGATGGATTAGACATGGAAGATTACCCCATAGTTACAGATGGTACAAAAGTTGACCTCACAATAAAACCAGTCTCTTCTCCACTCTCTTCCCATTTTAATAAAATCCAAATCATAGTGAAGTTTTCAGCAAGACAGATCATCATAGAGGCGGATAAAACAGACACAGTTCGTAGTTTGAAGGAAAAGATTCACATTCTTGATAACATACCAATCAAAAGAATGTCACTTTTCTTTTCAGGTGTGGAATTGGATGAAGATTTCAGAAACTTGAGTGAATATGGCATAAGTGAGTTTTCTGAGATTATTGTGTTCCTCAAGACGATGAGTCGCTCAAGAGATGATCCTCCTTCAAGGAAGTTGAGTTTGGTGGTGCAAACTTCTTCTAGTTTGCTGAATGCAGCAACGATTCCAGTGGAAATGAGAGATGCAAGTACTGTAAATGAGTTAAAGGAAATGTTGTTGAGCAGAAAAATTCTGCCACTTGATGAATATTTGTTCATACACAAGCAAAGGATAATGCGTGATGGCTGTAGCCTTAGGTGGCATGGAGTTGAAAATGGGGACTTTCTTTATGTCTTCAAAGGAACTGTTAGTCGCAGTGGCAGTTTCTAA	762	0.3845	MRVVIATRTNQFFIEVESQEKVVEIKRKIEQILSIPVASQILTVSGWELIDGLDMEDYPIVTDGTKVDLTIKPVSSPLSSHFNKIQIIVKFSARQIIIEADKTDTVRSLKEKIHILDNIPIKRMSLFFSGVELDEDFRNLSEYGISEFSEIIVFLKTMSRSRDDPPSRKLSLVVQTSSSLLNAATIPVEMRDASTVNELKEMLLSRKILPLDEYLFIHKQRIMRDGCSLRWHGVENGDFLYVFKGTVSRSGSF	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0997	253	CDD	Ubl_ubiquitin_like	87	154	-	-
	Lele09g0997	253	Gene3D	-	1	69	-	-
	Lele09g0997	253	ProSiteProfiles	Ubiquitin domain profile.	1	60	IPR000626	GO:0005515
	Lele09g0997	253	Pfam	Ubiquitin family	87	156	IPR000626	GO:0005515
	Lele09g0997	253	Pfam	Ubiquitin family	181	242	IPR000626	GO:0005515
	Lele09g0997	253	Pfam	Ubiquitin family	8	72	IPR000626	GO:0005515
	Lele09g0997	253	SUPERFAMILY	Ubiquitin-like	1	77	IPR029071	-
	Lele09g0997	253	SUPERFAMILY	Ubiquitin-like	184	246	IPR029071	-
	Lele09g0997	253	ProSiteProfiles	Ubiquitin domain profile.	170	242	IPR000626	GO:0005515
	Lele09g0997	253	Gene3D	-	84	156	-	-
	Lele09g0997	253	ProSiteProfiles	Ubiquitin domain profile.	85	160	IPR000626	GO:0005515
	Lele09g0997	253	Gene3D	-	157	249	-	-
	Lele09g0997	253	CDD	Ubl_ubiquitin_like	12	69	-	-
	Lele09g0997	253	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	73	-	-
	Lele09g0997	253	SUPERFAMILY	Ubiquitin-like	80	167	IPR029071	-
	Lele09g0997	253	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Lele09g0997	253	SMART	ubq_7	85	156	IPR000626	GO:0005515
	Lele09g0997	253	SMART	ubq_7	170	245	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0997	Lele-ChrLele09	18952674	18953435	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0997	85	156	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	34.247	4.93e-06	43.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g0997	09	18952674	18953435	Lele09g0997	09	18952674	18953435	ECH
	Lele09g0997	09	18952674	18953435	Lele11g1000	11	17024714	17026078	hybridization
	Lele09g0997	09	18952674	18953435	Lele12g0322	12	3013323	3014485	hybridization