LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0975	ATGCTTTTCACGTCACCGCATTGCATGATTGTACATTTTAATTTCTTGTTTACACATGCCCCCAGTTTATAGACGCCTTCGGAGTCAACGCTCCTGGCTCCATCCCTCAAACACAGGAGCACAACTTGCATGCAGAAATTAGAGAAGAGCCATACTAAAGGGGATGGATCCAAGTCCCTGGCAGAGAAGCTGGCGAGATGGAAAGAGTATAATGCGCAGCTTGATTCTTGCGGTGATGCCGATAAGCCAATTCGGAAAGTTCCTGCCAAAGGATCAAAGAAGGGATGCATGAAAGGCAAGGGAGGGCCTGAGAATTCTCGTTGTAACTACCGGGGCGTGAGGCAGAGGACATGGGGCAAGTGGGTGGCCGAAATTCGAGAGCCGAACAGAGGAAGTAGGCTCTGGTTGGGTACATTTCCTACTGCCATTGGAGCTGCTCTTGCCTATGATGAAGCAGCAAGAGCAATGTATGGTTCTTTGGCTCGCCTCAACTTTCCAAATGTTTCGGTCTCCAATTTCTCTAATGAATCTTCAAGAGATTCACTAGTTGCAACTCAATCTGATTCTGCAGTGCCAACTGAATCTGCGATGTCCCCAACCAATTCTGGCTTTGGCGAGTCAGATAATACCGACAAGAAACCGGTTCCTTTGAATGTAAAAGTTGAGGAAGGGGAAGTTGAACTGAGGATCAATTCGTCGTCGCTTTCATGA	711	0.4754	MLFTSPHCMIVHFNFLFTHAPSLXTPSESTLLAPSLKHRSTTCMQKLEKSHTKGDGSKSLAEKLARWKEYNAQLDSCGDADKPIRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIGAALAYDEAARAMYGSLARLNFPNVSVSNFSNESSRDSLVATQSDSAVPTESAMSPTNSGFGESDNTDKKPVPLNVKVEEGEVELRINSSSLS	236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0975	236	Pfam	AP2 domain	108	158	IPR001471	GO:0003700\|GO:0006355
	Lele09g0975	236	SUPERFAMILY	DNA-binding domain	109	166	IPR016177	GO:0003677
	Lele09g0975	236	PRINTS	Ethylene responsive element binding protein signature	110	121	IPR001471	GO:0003700\|GO:0006355
	Lele09g0975	236	PRINTS	Ethylene responsive element binding protein signature	132	148	IPR001471	GO:0003700\|GO:0006355
	Lele09g0975	236	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	45	200	-	-
	Lele09g0975	236	FunFam	Ethylene-responsive transcription factor 2	108	167	-	-
	Lele09g0975	236	MobiDBLite	consensus disorder prediction	181	220	-	-
	Lele09g0975	236	Gene3D	AP2/ERF domain	109	168	IPR036955	GO:0003700\|GO:0006355
	Lele09g0975	236	SMART	rav1_2	109	172	IPR001471	GO:0003700\|GO:0006355
	Lele09g0975	236	ProSiteProfiles	AP2/ERF domain profile.	109	166	IPR001471	GO:0003700\|GO:0006355
	Lele09g0975	236	MobiDBLite	consensus disorder prediction	181	208	-	-
	Lele09g0975	236	CDD	AP2	108	168	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0975	Lele-ChrLele09	18658333	18660657	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0975	53	206	AP2-EREBP Transcription Factor Family	AT2G40340	56.970	6.85e-51	167

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele09g0975		AP2	2.8e-14	CL0081