LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele09g0961	ATGGTGAGAACTCCAAGCTGTGATAAAAGTGGACTGAAGAAAGGAACATGGACACCAGAAGAAGATAGGAAGCTAATTGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTATGCAGGCCTTGCAAGATGTGGAAAGAGTTGCAGACTTCGATGGCTAAATTACCTGAGGCCCAACATCAAAAGAGGAAATTACACTCCTGAAGAAGAACAACTCATTATCCAACTGCACCAAGAACTCGGAAACAGATGGTCGGCGATTGCTGCGAAGCTGCCGGGAAGAACAGACAATGACATAAAGAACTACTGGCACACGAATCTCAAGAAGAAGATTCAAGACAACAAGTCGGGAAAACACACCCGAGTTGAAGATGAGCAGTCATCATCATCACGTGAAATTGAAGTTAACAATAATACTACTGGTGCTTGTGATAATCATCACACGACGGCGGATTTAAGTCGCCGGCCGTCGCCGGATCAGTCATCGTCGACTGTAACGACGGAGACCACGGCAGGAGGAGGCAGCAACGAATCAAGTTTGATAGTGGAAGATGATCATGATGAGTTTGCTTTTCTGAATGCATTGCCAGACGTAGATTTCTGGACAGATCCTTATGTGGCTGACATTTTCTGTGACCCTACAGAAGCAGGATCACCATTCCCATCCTTGTTAATTGATCAATCCGATTATTTTACTGTTGATCTATCGTGTGATGCACTGCTTTGGAGTTGGACTCAAAATAATGTTTACGACCAATAA	774	0.4444	MVRTPSCDKSGLKKGTWTPEEDRKLIAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWLNYLRPNIKRGNYTPEEEQLIIQLHQELGNRWSAIAAKLPGRTDNDIKNYWHTNLKKKIQDNKSGKHTRVEDEQSSSSREIEVNNNTTGACDNHHTTADLSRRPSPDQSSSTVTTETTAGGGSNESSLIVEDDHDEFAFLNALPDVDFWTDPYVADIFCDPTEAGSPFPSLLIDQSDYFTVDLSCDALLWSWTQNNVYDQ	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele09g0961	257	MobiDBLite	consensus disorder prediction	118	135	-	-
	Lele09g0961	257	MobiDBLite	consensus disorder prediction	136	152	-	-
	Lele09g0961	257	MobiDBLite	consensus disorder prediction	118	184	-	-
	Lele09g0961	257	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele09g0961	257	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele09g0961	257	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	172	-	-
	Lele09g0961	257	MobiDBLite	consensus disorder prediction	159	182	-	-
	Lele09g0961	257	FunFam	Transcription factor RAX3	7	67	-	-
	Lele09g0961	257	Gene3D	-	6	66	-	-
	Lele09g0961	257	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Lele09g0961	257	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele09g0961	257	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele09g0961	257	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Lele09g0961	257	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele09g0961	257	CDD	SANT	16	61	IPR001005	-
	Lele09g0961	257	Gene3D	-	69	144	-	-
	Lele09g0961	257	SMART	sant	66	114	IPR001005	-
	Lele09g0961	257	SMART	sant	13	63	IPR001005	-
	Lele09g0961	257	CDD	SANT	69	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele09g0961	Lele-ChrLele09	18497392	18498415	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele09g0961	1	213	MYB Transcription Factor Family	AT2G31180	48.357	1.68e-62	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele09g0961		Myb_DNA-binding	1e-13	CL0123